Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq62 143 6e-29 seq9 143 6e-29 seq32 113 1e-19 seq400 87.8 4e-12 seq275 87.8 4e-12 seq97 87.8 4e-12 seq202 86.0 1e-11 >seq62 Length=411361 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || ||||| ||||| ||||| | || | |||||||||||||| Sbjct 311304 GTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTG 311363 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || ||||| || || || || ||||| || ||||| || || || Sbjct 311364 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 311423 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| |||| ||||||||||| ||||| || | || | ||| || || || Sbjct 311424 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGT 311483 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 311484 CAGTGTCTTCACGAAAATTTGCAT 311507 >seq9 Length=1094565 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| || ||||| ||||| ||||| | || | |||||||||||||| Sbjct 204395 GTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTG 204454 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || ||||| || ||||| || || || || ||||| || ||||| || || || Sbjct 204455 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 204514 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| |||| ||||||||||| ||||| || | || | ||| || || || Sbjct 204515 CGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGT 204574 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 204575 CAGTGTCTTCACGAAAATTTGCAT 204598 >seq32 Length=600051 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || |||||||| ||||| || || | ||| | |||| |||||||| || || || ||| Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || |||||||| || | | || |||||||| || | || | ||| || || || || Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 | ||||||||||| || | ||| || || || | | ||||| ||||||||||| || Sbjct 414499 TTGATGGTGTCCGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCACA 414558 Query 195130 AACACTTGCATT 195141 || | ||||||| Sbjct 414559 AAAATTTGCATT 414570 >seq400 Length=47941 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || |||||||| || || || || ||||| |||| | || || ||||| Sbjct 29940 AACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCTTC 29881 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| ||||| || || || || |||||||| || || || || Sbjct 29880 GAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCCTG 29821 Query 195051 AAT 195053 || Sbjct 29820 GAT 29818 >seq275 Length=99064 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || |||||||| || || || || ||||| |||| | || || ||||| Sbjct 19851 AACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCTTC 19792 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| ||||| || || || || |||||||| || || || || Sbjct 19791 GAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCCTG 19732 Query 195051 AAT 195053 || Sbjct 19731 GAT 19729 >seq97 Length=302941 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || |||||||| || || || || ||||| |||| | || || ||||| Sbjct 46104 AACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCTTC 46163 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || |||||||| ||||| || || || || |||||||| || || || || Sbjct 46164 GAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCCTG 46223 Query 195051 AAT 195053 || Sbjct 46224 GAT 46226 >seq202 Length=131032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 ||||| |||||||| ||||| ||||| | | | | || || | ||| || || || Sbjct 51411 GACTCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCA 51470 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 || || ||||||||||| || || |||| || |||||||| || ||||| ||| ||| Sbjct 51471 AATATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACG 51530 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 ||| | || ||| | | || || | || || | ||||| || || ||||| ||| Sbjct 51531 TTCGCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTT 51590 Query 195127 ACGAA 195131 ||||| Sbjct 51591 ACGAA 51595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109449672586682