Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq127 143 3e-29 seq38 93.3 5e-14 >seq127 Length=223113 Score = 143 bits (158), Expect = 3e-29 Identities = 219/308 (71%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068 ||||| ||||| || ||||| || |||| |||||| | ||| || || | | ||| Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 |||||||| || || || ||||| || |||||||||| || |||||| || | | | Sbjct 209180 CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAG---GAA 209236 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 | || || ||||| || |||||||| || || || ||| ||| || ||| Sbjct 209237 CCCTTGCTA---ATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTC 209293 Query 19189 TCTATAGAATTAAATAGATACATA-CGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 || |||| |||||||| | || ||||| | || ||| |||||||| | || || || Sbjct 209294 TCCATAGCATTAAATA-ACCGATGGCGCTCTTGTGAATCCTTAACATAGGTGTCGATTAA 209352 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 |||| || | || |||||||||||||| ||||| || |||||||| |||||| | | Sbjct 209353 TAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAACTT 209412 Query 19308 TGCTTCTG 19315 ||||||| Sbjct 209413 AGCTTCTG 209420 >seq38 Length=464492 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 19014 TGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGA 19073 ||||| ||||||| ||||| | |||||||| |||||| || | ||||| ||| || Sbjct 130669 TGTTAGGCCAGGCAGAAGTCCACGTTTTTTTAGCCAGAAAATTGCGGCAAAACTTCCTGA 130728 Query 19074 AAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATT 19133 ||||| || || || ||||| ||||| ||||| |||||||| || | | || || Sbjct 130729 GAAGAAAATGCCCTCAACTGCAGCAAACGCAACGAGTCTTTCAGCAAAGGTCGCCTCCGA 130788 Query 19134 ATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 | | || ||| |||||||||||||||||||| || Sbjct 130789 ACTCGCAACCCAACGAAGTGCCCAATCAGCCTTCTTCTT 130827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093018795440