Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq127 114 2e-20 >seq127 Length=223113 Score = 114 bits (126), Expect = 2e-20 Identities = 214/309 (69%), Gaps = 14/309 (5%) Strand=Plus/Plus Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||||||||| |||||||||| |||| |||||||| |||||| || || |||| Sbjct 209120 GAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTA 209179 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG-TACCGAAAGTTGA 37342 |||||||| || || || || || || ||||| || | ||| | | ||| |||| || Sbjct 209180 CCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTAC--AAAG--GA 209235 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAAT 37399 || | | ||||| | ||||||||| ||| ||| || |||||||| Sbjct 209236 ACCCTTGCTA---ATCCAACGCAAAGCCCAATCTGCTTTT---TTACCTACCCATTCAAT 209289 Query 37400 TGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAAT 37459 || || || || || || | | |||| ||| | | ||| || || || Sbjct 209290 CGTCTCCATAGCATTAAATAACCGATGGCGCTCTTGTGAATCCTTAACATAGGTGTCGAT 209349 Query 37460 TAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACA 37519 || |||| ||| | ||||| |||||||||||||||||||| ||||| ||||||||| | Sbjct 209350 TAATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAAAAA 209409 Query 37520 CCTAGCTTC 37528 | ||||||| Sbjct 209410 CTTAGCTTC 209418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592300170705840