Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq62 104 2e-17 seq9 104 2e-17 >seq62 Length=411361 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || || || || ||||| ||||| | || | | |||| || Sbjct 311299 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 311358 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| |||| || || ||||| ||||| ||||| || || || || Sbjct 311359 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 311418 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || || ||||| || | ||||| || | ||||| ||||||| Sbjct 311419 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTG 311478 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || || || || |||||| Sbjct 311479 CCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| ||||| || || || || ||||| ||||| | || | | |||| || Sbjct 204390 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 204449 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | || || || ||||| |||| || || ||||| ||||| ||||| || || || || Sbjct 204450 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 204509 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || || ||||| || | ||||| || | ||||| ||||||| Sbjct 204510 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTG 204569 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || || || || |||||| Sbjct 204570 CCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267552621822