Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq127 109 8e-19 >seq127 Length=223113 Score = 109 bits (120), Expect = 8e-19 Identities = 200/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 18208 AAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACT 18267 ||| |||||||| ||||||| |||| |||||| |||||||| || | ||||||| Sbjct 209122 AAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTACC 209181 Query 18268 AGAAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATT 18326 |||||| || || ||||| || ||| || || || || | ||||| |||| | | Sbjct 209182 AGAAAAAAAGATGCCCTCTACCGCA-GCAAAAGCAATAAGCCTTTCTACAAA---GGAAC 209237 Query 18327 TATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 ||||| | |||| ||||| ||| ||| | || || ||| Sbjct 209238 CCTTGCTAA---TCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTCT 209294 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | ||||||||||| || || |||| ||||| || | ||| ||||||||||| | Sbjct 209295 CCATAGCATTAAATAACCGATGGCGCTCTTGTGAATCCTTAACATAGGTGTCGATTAATA 209354 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498 ||||||| | |||||||| || |||| |||||||| ||||| | |||||| Sbjct 209355 AAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAA 209406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731851452693600