Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_021791.1 Length=39148 Score E Sequences producing significant alignments: (Bits) Value seq390 95.1 3e-15 >seq390 Length=58657 Score = 95.1 bits (104), Expect = 3e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16554 CCGTAAACCAAAGCTGCATGATCTATTGATCAACATTCCTCCAGGGACAACCAAATCAAC 16613 |||| ||||||| ||||| || |||||||||||||||| ||||| || | ||||| || Sbjct 425 CCGTGAACCAAAACTGCACGACATATTGATCAACATTCCGCCAGGTTCATCTAAATCCAC 484 Query 16614 AATTTGTACTGTCATGCTGCCTGCATGGGTTTGGATCATTGACCC 16658 |||||||| || ||| ||||||| |||| |||| | | ||||| Sbjct 485 CATTTGTACAGTAATGATGCCTGCCTGGGCATGGACCGTCGACCC 529 Score = 95.1 bits (104), Expect = 3e-15 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 16554 CCGTAAACCAAAGCTGCATGATCTATTGATCAACATTCCTCCAGGGACAACCAAATCAAC 16613 |||| ||||||| ||||| || |||||||||||||||| ||||| || | ||||| || Sbjct 55917 CCGTGAACCAAAACTGCACGACATATTGATCAACATTCCGCCAGGTTCATCTAAATCCAC 55976 Query 16614 AATTTGTACTGTCATGCTGCCTGCATGGGTTTGGATCATTGACCC 16658 |||||||| || ||| ||||||| |||| |||| | | ||||| Sbjct 55977 CATTTGTACAGTAATGATGCCTGCCTGGGCATGGACCGTCGACCC 56021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125148662039720