Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-15 seq84 91.5 2e-12 seq127 87.8 2e-11 seq5 87.8 2e-11 >seq4 Length=1352950 Score = 102 bits (112), Expect = 1e-15 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 || |||||||||||||||||||||||||||||||| | || | ||| ||| | |||||| Sbjct 597626 CCAATGCCGCCGGCCGACTTGGAGATGAGCGCGCAGCGATTCAACGTCTCGCAAATGCCC 597685 Query 1630243 TCGATCGAGTCGGCCTTCA-TGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 || || ||||||| || |||| || ||||| ||||| || ||| || | || Sbjct 597686 TCAATGGAGTCGGAGACCATTGTCAAC-AGAAAACACGAGGACAGTTGGGGACGGCATGT 597744 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGC 1630328 ||| || ||||| || |||||||| || Sbjct 597745 GCCAGCATTGAACAGMGTGGGCGTTGC 597771 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| ||||| || ||||||||||| |||||||| | || Sbjct 425936 GCTTGGCCAACTCGCCGGGCAGAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGA 425877 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| |||| ||| ||||| | ||| ||||| |||| || Sbjct 425876 TGGTCGAGCGTTTGTTGTAGTGGGCCAAACGCGATGCCTCCGCGCCAATGCGCTCGAACA 425817 Query 1254463 TGTCGTTGACAAA 1254475 ||||||||| || Sbjct 425816 CGTCGTTGACGAA 425804 >seq84 Length=314002 Score = 91.5 bits (100), Expect = 2e-12 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| ||||| || ||||||||||| |||||||| | || Sbjct 123057 GCTTGGCCAACTCGCCGGGCAGAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGA 123116 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||| ||| ||||| | ||| ||||| |||| || Sbjct 123117 TGGTCGAGCGCTTGTTGTAGTGGGCCAAACGCGACGCCTCCGCGCCAATGCGCTCGAACA 123176 Query 1254463 TGTCGTTGACAAA 1254475 ||||||||| || Sbjct 123177 CGTCGTTGACGAA 123189 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| ||||| || ||||||||||| |||||||| | || Sbjct 201121 GCTTGGCCAACTCGCCGGGCAGAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGA 201062 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| |||| ||| ||||| | ||| ||||| |||| || Sbjct 201061 TGGTCGAGCGTTTGTTGTAGTGGGCCAAACGCGACGCCTCCGCGCCAATGCGCTCGAACA 201002 Query 1254463 TGTCGTTGACAAA 1254475 ||||||||| || Sbjct 201001 CGTCGTTGACGAA 200989 >seq127 Length=223113 Score = 87.8 bits (96), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || ||||| ||||| || || || |||||||||||||| || ||||| || || |||||| Sbjct 209132 CCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTACCAGAAAAAAAG 209191 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGG 869321 |||||||| || || ||||| | || |||| || |||||| Sbjct 209192 ATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAAAGG 209234 >seq5 Length=1308498 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| ||||| || ||||||||||| |||||||| | || Sbjct 1262340 GCTTGGCCAACTCGCCGGGCAGAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGA 1262281 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| |||| |||| ||| ||||| | ||| ||||| |||| || Sbjct 1262280 TGGTCGAGCGTTTGTTGTAGTGGGCCAAACGTGACGCCTCCGCGCCAATGCGCTCGAACA 1262221 Query 1254463 TGTCGTTGACAAA 1254475 ||||||||| || Sbjct 1262220 CGTCGTTGACGAA 1262208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106954882721982