Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq62 105 6e-18 seq9 105 6e-18 seq36 95.1 1e-14 seq202 89.7 5e-13 seq4 82.4 7e-11 >seq62 Length=411361 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| ||||| || || | || || || | Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 311448 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||||| || |||| || || || |||||| ||||| || || || || || ||||| Sbjct 311447 GACACAGTTGACAACGTGAAGACGAA-GATCCAGGACAAGGAGGGCATCCCGCCTGATCA 311389 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||||||||||| |||||||| || ||| | | || | || || || Sbjct 311388 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAA 311329 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| ||||| || || || |||||||| Sbjct 311328 CATTCAGAAGGAGTCTACTCTTCACTTGGT 311299 >seq9 Length=1094565 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| ||||| || || | || || || | Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 204539 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||||| || |||| || || || |||||| ||||| || || || || || ||||| Sbjct 204538 GACACAGTTGACAACGTGAAGACGAA-GATCCAGGACAAGGAGGGCATCCCGCCTGATCA 204480 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| ||||||||||||| |||||||| || ||| | | || | || || || Sbjct 204479 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAA 204420 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| ||||| || || || |||||||| Sbjct 204419 CATTCAGAAGGAGTCTACTCTTCACTTGGT 204390 >seq36 Length=625759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| ||||| || || || || || || || || |||| | Sbjct 424856 ATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATCACTCTGGAGGTTGAGGCCAGC 424797 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| || || || || || ||||| Sbjct 424796 GACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 424737 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||||||||||||||||| Sbjct 424736 CAGCGTTTGATCTTTGCCGG 424717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || ||||| ||||| || || || || || || || || |||| | Sbjct 425129 ATGCAAATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTTGAGGCCAGC 425070 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| || || || || || ||||| Sbjct 425069 GACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 425010 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||||||||||| ||||| Sbjct 425009 CAGCGTTTGATCTTCGCCGG 424990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| ||||| || || || || || || || || |||| | Sbjct 425402 ATGCAGATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTCTGGAGGTTGAGGCCAGC 425343 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| || || || || || ||||| Sbjct 425342 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 425283 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || |||||||||||||| Sbjct 425282 CAGCGCTTGATCTTTGCCGG 425263 >seq202 Length=131032 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/159 (73%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 24775 AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGAT 24834 |||| || || ||| ||||| |||||||| || || | || || |||||||| |||| Sbjct 51532 AACGTGAAGACCAAA-ATCCATGACAAAGAGGGGATTCGGCCGGAGCAACAACGACTGAT 51474 Query 24835 CTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGA 24894 ||||| ||||||||| |||| || | | | | || | || || |||||||||||||| Sbjct 51473 ATTTGCGGGGAAACAGTTGGACGACATGTGCAGCGTGGCCGACTACAACATTCAAAAGGA 51414 Query 24895 ATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || | || || | |||||| ||| ||||||| || Sbjct 51413 GTCTAACCTCCATCTAACGTTGCGGTTGTGCGGAGGTGG 51375 >seq4 Length=1352950 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||||| ||||| || || || || ||||| || || |||| | Sbjct 417661 ATGCAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTCGAGGTCGAGGCCAGC 417720 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 417721 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 417780 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||| ||||||||||||| Sbjct 417781 CAGCGTCTGATCTTTGCCGG 417800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449884969124880