Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 3e-15 >seq38 Length=464492 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 34502 CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTC 34561 |||| ||||| |||| |||| ||| || |||| |||||||| || || || ||||| | Sbjct 427126 CAAG-GCCTTCGCGACGTCGGACATATTTGCGATAACAGTCTTAATACCATTTCCCTTGC 427184 Query 34562 CTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGC 34621 ||||||| || || | ||||| |||||||||||||| || |||| || |||| | Sbjct 427185 CTTCGACTTTTGCCAAAATGCGAGGCATTTTGTAGCGATAAAACGGATCATGCACACCAC 427244 Query 34622 GGTTAACGTT 34631 |||||||||| Sbjct 427245 GGTTAACGTT 427254 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 34502 CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTC 34561 |||| ||||| |||| |||| ||| || |||| |||||||| || || || ||||| | Sbjct 428683 CAAG-GCCTTCGCGACGTCGGACATATTTGCGATAACAGTCTTAATACCATTTCCCTTGC 428625 Query 34562 CTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGC 34621 ||||||| || || | ||||| |||||||||||||| || |||| || |||| | Sbjct 428624 CTTCGACTTTTGCCAAAATGCGAGGCATTTTGTAGCGATAAAACGGATCATGCACACCAC 428565 Query 34622 GGTTAACGTT 34631 |||||||||| Sbjct 428564 GGTTAACGTT 428555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412830299235278