Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq84 123 4e-22 seq5 116 6e-20 seq4 116 6e-20 seq592 107 3e-17 seq127 98.7 2e-14 seq24 98.7 2e-14 seq1 98.7 2e-14 >seq84 Length=314002 Score = 123 bits (136), Expect = 4e-22 Identities = 133/174 (76%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| |||||| |||||| ||| Sbjct 123018 TGTACTTCGTCACTGCCTTCGTCCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCGGGCA 123077 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||||| || ||||||||||| |||||||| | ||| || |||||||| |||| Sbjct 123078 GAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGATGGTCGAGCGCTTGTTGTAGT 123137 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 | || | ||| | ||||| | ||| ||||| |||| || ||||||||| || Sbjct 123138 GGGCCAAACGCGAC--GCCTCCGCGCCAATGCGCTCGAACACGTCGTTGACGAA 123189 Score = 120 bits (132), Expect = 5e-21 Identities = 132/174 (76%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| |||||| |||||| ||| Sbjct 201160 TGTACTTCGTCACTGCCTTCGTCCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCGGGCA 201101 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 ||||| || ||||||||||| |||||||| | ||| || ||| |||| |||| Sbjct 201100 GAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGATGGTCGAGCGTTTGTTGTAGT 201041 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 | || | ||| | ||||| | ||| ||||| |||| || ||||||||| || Sbjct 201040 GGGCCAAACGCGAC--GCCTCCGCGCCAATGCGCTCGAACACGTCGTTGACGAA 200989 >seq5 Length=1308498 Score = 116 bits (128), Expect = 6e-20 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| |||||| |||||| ||| Sbjct 1262379 TGTACTTTGTCACTGCCTTCGTCCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCGGGCA 1262320 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||||||||| |||||||| | ||| || ||| ||||| | Sbjct 1262319 GAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGATGGTCGAGCGTTTGTTGTAGT 1262260 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 | |||| || ||||| | ||| ||||| |||| || ||||||||| || Sbjct 1262259 GGGCCAAACGTGACGCCTCCGCGCCAATGCGCTCGAACACGTCGTTGACGAA 1262208 >seq4 Length=1352950 Score = 116 bits (128), Expect = 6e-20 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| |||||| |||||| ||| Sbjct 425975 TGTACTTCGTCACTGCCTTCGTTCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCGGGCA 425916 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||||||||| |||||||| | ||| || ||| ||||| | Sbjct 425915 GAATCAGCCGGACGGCGGTCTGAATCTCGCGAGAAGAGATGGTCGAGCGTTTGTTGTAGT 425856 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 | |||| || ||||| | ||| ||||| |||| || ||||||||| || Sbjct 425855 GGGCCAAACGCGATGCCTCCGCGCCAATGCGCTCGAACACGTCGTTGACGAA 425804 Score = 116 bits (128), Expect = 6e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 2073658 CCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCC 2073717 || ||||||||||||| |||||||||||||||||| |||| ||||||| | |||||| Sbjct 597626 CCAATGCCGCCGGCCGACTTGGAGATGAGCGCGCAGCGATTCAACGTCTCGCAAATGCCC 597685 Query 2073718 TCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTG 2073777 || || ||||||| ||| ||||||||| ||||| || ||| || || ||| Sbjct 597686 TCAATGGAGTCGGAGACCATTGTCAACAGAAAACACGAGGACAGTTGGGGACGGCATGTG 597745 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGC 2073803 || |||||||| || |||||||| || Sbjct 597746 CCAGCATTGAACAGMGTGGGCGTTGC 597771 >seq592 Length=6696 Score = 107 bits (118), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1485468 GTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCG 1485527 ||||||||| || || ||||| || ||||| |||||||||||| | |||| |||||| | Sbjct 4326 GTTGTACTTCGTCACCGCCTTTGTTCCCTCGGAGACGGCGTGCTTAGCCAACTCGCCGGG 4267 Query 1485528 CATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT 1485587 || ||||| || || || |||||||| ||||||| || || |||||||| Sbjct 4266 CAGAATCAGTCGGACTGCAGTCTGGATTTCGCGGGACGAAATGGTCGAACGCTTGTTGTA 4207 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||||||| || ||||| | || ||||| |||| ||| |||||||| || Sbjct 4206 ATGCGCCAGACGAGAAGCCTCCGCTCCAATGCGCTCGAACATATCGTTGACGAA 4153 >seq127 Length=223113 Score = 98.7 bits (108), Expect = 2e-14 Identities = 196/287 (68%), Gaps = 15/287 (5%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| ||||| || || || ||||||||||||||||| ||||| || || |||||| Sbjct 209132 CCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAACTACCAGAAAAAAAG 209191 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 |||||||| || || ||||| | | |||| || ||| ||| | | ||| Sbjct 209192 ATGCCCTCTACCGCAGCAAAAGCAATAAGCCTTTCTACAA--------AGGAAC-CCTTG 209242 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 | ||||| || ||||| ||||| ||||| | ||| | | ||| || || || Sbjct 209243 CTAATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATCGTCTCCATAGCA 209302 Query 794560 CGAAAGA---GGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 ||| | | ||| | ||| | | ||||| || ||||||||||| | | || Sbjct 209303 TTAAATAACCGATGG-CGCTCTTG--TGAATCCTTAACATAGGTGTCGATTAATAAAGAA 209359 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAA 794663 || ||||| || || || ||||| || || || || || |||||||| Sbjct 209360 TAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAA 209406 >seq24 Length=707015 Score = 98.7 bits (108), Expect = 2e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| | |||| |||||| ||| Sbjct 346026 TGTACTTCGTCACCGCCTTTGTCCCCTCGGAGACGGCGTGCTTAGCCAACTCGCCGGGCA 345967 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || |||||||| ||||||| ||| || |||||||| Sbjct 345966 GAATCAGTCGGACCGCAGTCTGGATTTCGCGGGACGAGATGGTCGAACGCTTGTTGTAAT 345907 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||||||| || ||||| | || ||||| || | || |||||| || || Sbjct 345906 GCGCCAGACGAGAAGCCTCCGCACCAATGCGCTCAAACACGTCGTTAACGAA 345855 Score = 98.7 bits (108), Expect = 2e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| | |||| |||||| ||| Sbjct 415935 TGTACTTCGTCACCGCCTTTGTCCCCTCGGAGACGGCGTGCTTAGCCAACTCGCCGGGCA 415994 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || |||||||| ||||||| ||| || || ||||| Sbjct 415995 GAATCAGTCGGACCGCAGTCTGGATTTCGCGGGACGAGATGGTCGAACGTTTGTTGTAAT 416054 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||||||| || ||||| | || ||||| || | || ||||||||| || Sbjct 416055 GCGCCAGACGAGAAGCCTCCGCACCAATGCGCTCAAACACGTCGTTGACGAA 416106 >seq1 Length=2517252 Score = 98.7 bits (108), Expect = 2e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || ||||| |||||||||||| | |||| |||||| ||| Sbjct 2459418 TGTACTTCGTCACAGCCTTTGTTCCCTCGGAGACGGCGTGCTTCGCCAACTCGCCGGGCA 2459477 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || |||||||| ||||||| || || |||||||| Sbjct 2459478 GAATCAGTCGGACTGCAGTCTGGATTTCGCGGGACGAAATGGTCGAACGCTTGTTGTAAT 2459537 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||||||| || ||||| | || ||||| |||| || |||||||| || Sbjct 2459538 GCGCCAGACGAGAAGCCTCCGCACCAATGCGCTCGAACACATCGTTGACGAA 2459589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916007482735994