Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq202 89.7 3e-13 seq62 89.7 3e-13 seq9 89.7 3e-13 seq4 82.4 5e-11 >seq202 Length=131032 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| | | ||||| | ||||||| || || || || || Sbjct 51413 CTCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCAAA 51472 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||||||||| || || || | | |||||| ||||| | ||||| || ||| Sbjct 51473 TATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACGTT 51532 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 || || | || ||| ||| || | | || |||||||| || |||| |||||||| Sbjct 51533 CGCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTTAC 51592 Query 34966 AAAGATCTG 34974 || ||||| Sbjct 51593 GAATATCTG 51601 >seq62 Length=411361 Score = 89.7 bits (98), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 34736 CATATCCAATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGA 34795 ||| |||| || | || ||||| | | ||||||| ||||| || |||||||||| Sbjct 311267 CATGTCCAC-CAATGCCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGA 311325 Query 34796 ATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGT 34855 ||||| ||||| | | |||| |||| || || || || ||||| |||||||| ||| Sbjct 311326 ATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGT 311385 Query 34856 TGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || |||| | ||||||||||| Sbjct 311386 TGCTGATCAGGCGGGATGCCCTCCTTGTC 311414 >seq9 Length=1094565 Score = 89.7 bits (98), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 34736 CATATCCAATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGA 34795 ||| |||| || | || ||||| | | ||||||| ||||| || |||||||||| Sbjct 204358 CATGTCCAC-CAATGCCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGA 204416 Query 34796 ATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGT 34855 ||||| ||||| | | |||| |||| || || || || ||||| |||||||| ||| Sbjct 204417 ATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGT 204476 Query 34856 TGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || |||| | ||||||||||| Sbjct 204477 TGCTGATCAGGCGGGATGCCCTCCTTGTC 204505 >seq4 Length=1352950 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||| |||||||| || |||||||| |||| | ||||||||||| | || || Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | || | || |||||||||| || | || |||||||| || ||||| Sbjct 415697 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 415756 Query 34958 GTCTTTACAAAGATCTGCATGAT 34980 ||||| || || || |||||||| Sbjct 415757 GTCTTGACGAAAATTTGCATGAT 415779 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||| |||||||| || |||||||| |||| | ||||||||||| | || || Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | || | || |||||||||| || | || |||||||| || ||||| Sbjct 416534 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416475 Query 34958 GTCTTTACAAAGATCTGCATGAT 34980 ||||| || || || |||||||| Sbjct 416474 GTCTTGACGAAAATTTGCATGAT 416452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683884770274