Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq90 91.5 1e-12 >seq90 Length=280131 Score = 91.5 bits (100), Expect = 1e-12 Identities = 189/276 (68%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667 |||| ||| |||||||||||| |||||| || ||||| | | ||| | || || Sbjct 97831 TTAA-AACCTTAAATGGCCAAAGTTTCATGTCGTCCTGAACGGTCTTGTCGGTGAACTCC 97889 Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTTGATA 282726 | || || | |||||| ||||||||||| || || || || | || |||| || | Sbjct 97890 CGTCCGATGAGTCGTTTGGCATCAAAAATGGTGTTTTCCGGGTTCAGTGTCAGC-TGGTT 97948 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCT---GTCTC---TGTAAATGAAACATATGATGG 282780 ||||| |||||||| |||| ||||| || || ||||| | ||| || ||||| Sbjct 97949 CTTGGCCGCATCTCCGATCAACCGTTCTCCAGTGTCCGGCGTAAACGCAACGTAGGATGG 98008 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 || | || || || || || || || || || ||||| | ||||||| | || || Sbjct 98009 CGTGATCCGGTTCCCCTGGTCGTTGGCGATTATCTCAACCCTGCCATTTTTGTAGACTCC 98068 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 |||||| | | || || || | ||||| ||||| Sbjct 98069 AACACAAGAATAGGTGGTGCCCAGGTCAATGCCAAT 98104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740520130891596