Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq62 131 2e-25 seq9 131 2e-25 seq4 95.1 1e-14 seq36 93.3 4e-14 >seq62 Length=411361 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| ||| |||| | | | || |||||||| ||||| Sbjct 311311 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCA-TCTTCGAGCTGTTTGCC 311369 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||||| ||||| || || |||||||| |||||||| |||||| ||| Sbjct 311370 GGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTT 311429 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||||||||| | |||| |||||||||||||| || Sbjct 311430 CACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGT 311489 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||||||| |||||| Sbjct 311490 CTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| ||| |||| | | | || |||||||| ||||| Sbjct 204402 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCA-TCTTCGAGCTGTTTGCC 204460 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || ||||| ||||| || || |||||||| |||||||| |||||| ||| Sbjct 204461 GGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTT 204520 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||||||||| | |||| |||||||||||||| || Sbjct 204521 CACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGT 204580 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||||||| |||||| Sbjct 204581 CTTCACGAAAATTTGCATG 204599 >seq4 Length=1352950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||||||||| || || ||||| |||||||| |||||| ||| | | | Sbjct 415646 ATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 415705 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | |||||| ||| ||| || || | |||| ||| |||||||| ||||| || ||| Sbjct 415706 TCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGACG 415765 Query 133650 AAAATCTGCATG 133661 ||||| |||||| Sbjct 415766 AAAATTTGCATG 415777 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||||||||| || || ||||| |||||||| |||||| ||| | | | Sbjct 417791 ATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 417732 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | |||||| ||| ||| || |||| |||| ||| |||||||| || || || ||| Sbjct 417731 TCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGCGTCTTGACG 417672 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 417671 AAAATTTGCAT 417661 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||||||||| || || ||||| |||||||| |||||| ||| | | | Sbjct 416585 ATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 416526 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || ||| ||| ||| || || | |||| ||| |||||||| ||||| || ||| Sbjct 416525 TCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGACG 416466 Query 133650 AAAATCTGCATG 133661 ||||| |||||| Sbjct 416465 AAAATTTGCATG 416454 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 148810 ATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACT 148869 |||| || | || || ||||| | |||||||| || ||||||||||| | || | Sbjct 596797 ATCGATTAAGCGCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATT 596856 Query 148870 CTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCT 148929 | | ||| |||| ||||| ||| |||||| || ||||| ||| | ||||| || Sbjct 596857 CAATGATTTCGGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACT 596916 Query 148930 TGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | | |||||||||||||| ||| ||||||||| ||| || ||| ||||| Sbjct 596917 TCCGATTGCACGCGTCCTTAAACAACATGTACGGCGTGCCGGTCTCCGTCTGCG 596970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || ||||||||||| || || ||||| |||||||| |||||| ||| | | | Sbjct 417511 ATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 417452 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | |||||| | | ||| || || | |||| ||| |||||||| ||||| || ||| Sbjct 417451 TCGATGGTGTCGCT-GCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGAGTCTTGACG 417393 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 417392 AAAATTTGCAT 417382 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| || || || | || ||||| || ||||||||| || | || |||| Sbjct 675106 ACCTGGAAATCCCCCGAAAGGACGCGACGGCTGTACACGTTGGATGTGTAAGGCTCAATG 675047 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 |||||||||||||| | ||| |||||||||| || || ||||| ||| |||||||| Sbjct 675046 GACTCGTTGTTGCCGAGAATTTGCGCGGTCGACGCGGTTGGCATCGGCGCGACCAGCAGA 674987 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGC-TTCAGAGCCGCCCAGTCCCAGAGCGG 148444 |||||| | || ||||| | | | | || || |||||||| ||||| | | Sbjct 674986 CTGTTGCG-GACCCCAAATTTTGCAATGCGTTCTTTAAGCGCCGCCCAATCCCACAACTT 674928 Query 148445 CGACGGTGTCACGTTCCAC 148463 | |||||| || |||||| Sbjct 674927 GGTCGGTGTAACATTCCAC 674909 >seq36 Length=625759 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133536 CGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACC 133595 |||||||| || || || ||||| |||||||| ||||||| ||| | | ||| | Sbjct 425278 CGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATG 425337 Query 133596 GTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATC 133655 |||||| ||| ||| || || | |||| ||| |||||||| || || || ||||||||| Sbjct 425338 GTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGCGTCTTCACGAAAATC 425397 Query 133656 TGCATG 133661 |||||| Sbjct 425398 TGCATG 425403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483407227961040