Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq62 129 1e-24 seq9 129 1e-24 seq400 84.2 5e-11 seq275 84.2 5e-11 seq97 84.2 5e-11 >seq62 Length=411361 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||||||||||||||| ||||| ||||| |||||||| || Sbjct 311492 AAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCGGACACAGTTGACAAC 311433 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| || ||| | || ||||| Sbjct 311432 GTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTT 311373 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | |||||||| | || |||||||| |||||| | ||||| |||||| Sbjct 311372 GCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAACATTCAGAAGGAGTCT 311313 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 311312 ACTCTTCAC 311304 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||||||||| ||||| | || ||||| ||||| || | |||||||| ||||| Sbjct 311304 GTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTG 311363 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| ||||| |||||||| ||| Sbjct 311364 TTTGCCGGCAAAGATCAGCCGTTGCTGA 311391 >seq9 Length=1094565 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||||||||||||||| ||||| ||||| |||||||| || Sbjct 204583 AAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCGGACACAGTTGACAAC 204524 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| || ||| | || ||||| Sbjct 204523 GTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTT 204464 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| | |||||||| | || |||||||| |||||| | ||||| |||||| Sbjct 204463 GCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAACATTCAGAAGGAGTCT 204404 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 204403 ACTCTTCAC 204395 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 204769 GTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 204828 ||||||||||||||| ||||| | || ||||| ||||| || | |||||||| ||||| Sbjct 204395 GTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTG 204454 Query 204829 CTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||| ||||| |||||||| ||| Sbjct 204455 TTTGCCGGCAAAGATCAGCCGTTGCTGA 204482 >seq400 Length=47941 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || || || ||| |||||| || |||| ||||||||||||||||| Sbjct 29817 GATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCA 29876 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 | | ||||| || ||||| |||| |||||| ||||||| || || ||||| || || Sbjct 29877 GCTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCT 29936 Query 206376 TGTT 206379 |||| Sbjct 29937 TGTT 29940 >seq275 Length=99064 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || || || ||| |||||| || |||| ||||||||||||||||| Sbjct 19728 GATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCA 19787 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 | | ||||| || ||||| |||| |||||| ||||||| || || ||||| || || Sbjct 19788 GCTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCT 19847 Query 206376 TGTT 206379 |||| Sbjct 19848 TGTT 19851 >seq97 Length=302941 Score = 84.2 bits (92), Expect = 5e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||| || || || || || ||| |||||| || |||| ||||||||||||||||| Sbjct 46227 GATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCA 46168 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 | | ||||| || ||||| |||| |||||| ||||||| || || ||||| || || Sbjct 46167 GCTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCT 46108 Query 206376 TGTT 206379 |||| Sbjct 46107 TGTT 46104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181786790890566