Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq62 95.1 1e-14 seq9 95.1 1e-14 seq4 95.1 1e-14 >seq62 Length=411361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| || || || ||||||||||||||| |||| | Sbjct 311314 GACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 311373 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || ||||| || || ||||| || || || || || |||| Sbjct 311374 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACG 311433 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || || || || | |||||| || | || | |||||| || ||||| || || Sbjct 311434 TTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTC 311493 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 311494 ACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| || || || ||||||||||||||| |||| | Sbjct 204405 GACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCA 204464 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || ||||| || || ||||| || || || || || |||| Sbjct 204465 AAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACG 204524 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || || || || | |||||| || | || | |||||| || ||||| || || Sbjct 204525 TTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTC 204584 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 204585 ACGAAAATTTGCATG 204599 >seq4 Length=1352950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518 || || || |||| ||||| || || ||||| || || | || || | | |||||| Sbjct 596808 GCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAA-TATTCAATGATTTC 596866 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 || ||||| || |||||||||| ||||| ||||||||||| ||||||||||| Sbjct 596867 GGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATTGCA 596926 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 |||||| || || | ||||||||| ||||||||| Sbjct 596927 CGCGTCCTTAAACAACATGTACGGCGTGCCGGTCTC 596962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597819140560