Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq84 120 4e-21 seq5 113 6e-19 seq4 113 6e-19 seq592 98.7 1e-14 seq24 95.1 2e-13 seq1 95.1 2e-13 >seq84 Length=314002 Score = 120 bits (132), Expect = 4e-21 Identities = 120/154 (78%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT--GGCGCGCTCCA 725046 || ||||||||| || |||| ||||| ||| | ||||| ||||| | ||| | || || Sbjct 123189 TTCGTCAACGACGTGTTCGAGCGCATTGGCGCGGAGGC--GTCGCGTTTGGCCCACTACA 123132 Query 725047 ACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCG 725106 |||||||| || ||| | |||||||| ||||||||||| || ||||| ||| || Sbjct 123131 ACAAGCGCTCGACCATCTCTTCTCGCGAGATTCAGACCGCCGTCCGGCTGATTCTGCCCG 123072 Query 725107 GCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| |||||| |||||||||||||||||| || Sbjct 123071 GCGAGTTGGCCAAGCACGCCGTCTCCGAGGGGAC 123038 Score = 114 bits (126), Expect = 2e-19 Identities = 119/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT--GGCGCGCTCCA 725046 || ||||||||| || |||| ||||| ||| | ||||| ||||| | ||| | || || Sbjct 200989 TTCGTCAACGACGTGTTCGAGCGCATTGGCGCGGAGGC--GTCGCGTTTGGCCCACTACA 201046 Query 725047 ACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCG 725106 |||| ||| || ||| | |||||||| ||||||||||| || ||||| ||| || Sbjct 201047 ACAAACGCTCGACCATCTCTTCTCGCGAGATTCAGACCGCCGTCCGGCTGATTCTGCCCG 201106 Query 725107 GCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| |||||| |||||||||||||||||| || Sbjct 201107 GCGAGTTGGCCAAGCACGCCGTCTCCGAGGGGAC 201140 >seq5 Length=1308498 Score = 113 bits (124), Expect = 6e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || ||||||||| || |||| ||||| ||| | ||||| || |||| | || |||| Sbjct 1262208 TTCGTCAACGACGTGTTCGAGCGCATTGGCGCGGAGGCGTCACGTTTGGCCCACTACAAC 1262267 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 || ||| || ||| | |||||||| ||||||||||| || ||||| ||| |||| Sbjct 1262268 AAACGCTCGACCATCTCTTCTCGCGAGATTCAGACCGCCGTCCGGCTGATTCTGCCCGGC 1262327 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||||| |||||||||||||||||| || Sbjct 1262328 GAGTTGGCCAAGCACGCCGTCTCCGAGGGGAC 1262359 >seq4 Length=1352950 Score = 113 bits (124), Expect = 6e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || ||||||||| || |||| ||||| ||| | ||||| || |||| | || |||| Sbjct 425804 TTCGTCAACGACGTGTTCGAGCGCATTGGCGCGGAGGCATCGCGTTTGGCCCACTACAAC 425863 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 || ||| || ||| | |||||||| ||||||||||| || ||||| ||| |||| Sbjct 425864 AAACGCTCGACCATCTCTTCTCGCGAGATTCAGACCGCCGTCCGGCTGATTCTGCCCGGC 425923 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||||| |||||||||||||||||| || Sbjct 425924 GAGTTGGCCAAGCACGCCGTCTCCGAGGGAAC 425955 Score = 96.9 bits (106), Expect = 5e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || |||||||| || || ||||| ||||| || || || || ||||| |||||| Sbjct 597771 GCAACGCCCACKCTGTTCAATGCTGGCACATGCCGTCCCCAACTGTCCTCGTGTTTTCTG 597712 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 ||| ||| |||| || || |||||||| | || ||| | || | ||||||||| Sbjct 597711 TTGACAATGGTCTCCGACTCCATTGAGGGCATTTGCGAGACGTTGAATCGCTGCGCGCTC 597652 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGT 260065 ||||||||| ||||||||||||| ||| Sbjct 597651 ATCTCCAAGTCGGCCGGCGGCATTGGT 597625 >seq592 Length=6696 Score = 98.7 bits (108), Expect = 1e-14 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || |||||||| ||| |||| ||||| || | ||||| ||| ||||||| | |||| Sbjct 4153 TTCGTCAACGATATGTTCGAGCGCATTGGAGCGGAGGCTTCTCGTCTGGCGCATTACAAC 4212 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 ||||| || || | ||||| |||||||| || || || ||||| ||| |||| Sbjct 4213 AAGCGTTCGACCATTTCGTCCCGCGAAATCCAGACTGCAGTCCGACTGATTCTGCCCGGC 4272 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||| | |||||||||||||||||| || Sbjct 4273 GAGTTGGCTAAGCACGCCGTCTCCGAGGGAAC 4304 >seq24 Length=707015 Score = 95.1 bits (104), Expect = 2e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || || |||||| || | || ||||| || | ||||| ||| ||||||| | |||| Sbjct 345855 TTCGTTAACGACGTGTTTGAGCGCATTGGTGCGGAGGCTTCTCGTCTGGCGCATTACAAC 345914 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 ||||| || ||| | ||||| |||||||| || || || ||||| ||| |||| Sbjct 345915 AAGCGTTCGACCATCTCGTCCCGCGAAATCCAGACTGCGGTCCGACTGATTCTGCCCGGC 345974 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||| | |||||||||||||||||| || Sbjct 345975 GAGTTGGCTAAGCACGCCGTCTCCGAGGGGAC 346006 Score = 95.1 bits (104), Expect = 2e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || ||||||||| || | || ||||| || | ||||| ||| ||||||| | |||| Sbjct 416106 TTCGTCAACGACGTGTTTGAGCGCATTGGTGCGGAGGCTTCTCGTCTGGCGCATTACAAC 416047 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 || || || ||| | ||||| |||||||| || || || ||||| ||| |||| Sbjct 416046 AAACGTTCGACCATCTCGTCCCGCGAAATCCAGACTGCGGTCCGACTGATTCTGCCCGGC 415987 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||| | |||||||||||||||||| || Sbjct 415986 GAGTTGGCTAAGCACGCCGTCTCCGAGGGGAC 415955 >seq1 Length=2517252 Score = 95.1 bits (104), Expect = 2e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 724989 TTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAAC 725048 || |||||||| || |||| ||||| || | ||||| ||| ||||||| | |||| Sbjct 2459589 TTCGTCAACGATGTGTTCGAGCGCATTGGTGCGGAGGCTTCTCGTCTGGCGCATTACAAC 2459530 Query 725049 AAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGC 725108 ||||| || || | ||||| |||||||| || || || ||||| ||| |||| Sbjct 2459529 AAGCGTTCGACCATTTCGTCCCGCGAAATCCAGACTGCAGTCCGACTGATTCTGCCCGGC 2459470 Query 725109 GAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || |||| | |||||||||||||||||| || Sbjct 2459469 GAGTTGGCGAAGCACGCCGTCTCCGAGGGAAC 2459438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177594569171852