Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq62 122 8e-23 seq9 122 8e-23 seq32 107 2e-18 seq202 102 7e-17 >seq62 Length=411361 Score = 122 bits (134), Expect = 8e-23 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| ||||||||||| |||||||| || || | || || Sbjct 311299 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 311358 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || ||||| |||| ||| ||||| || | || | || |||||||||| | Sbjct 311359 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 311418 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGT 35703 ||||| ||||| |||| | || ||||| ||| ||||| |||| |||||||| Sbjct 311419 ATCTTCGTCTTCA-CGTTGTCAACTGTGTC---CGAACTCTCCACGTCCAAAGTGATCGT 311474 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || |||| || ||||| || || ||||| Sbjct 311475 TTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 311507 >seq9 Length=1094565 Score = 122 bits (134), Expect = 8e-23 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| ||||||||||| |||||||| || || | || || Sbjct 204390 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 204449 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| || || ||||| |||| ||| ||||| || | || | || |||||||||| | Sbjct 204450 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 204509 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCGT 35703 ||||| ||||| |||| | || ||||| ||| ||||| |||| |||||||| Sbjct 204510 ATCTTCGTCTTCA-CGTTGTCAACTGTGTC---CGAACTCTCCACGTCCAAAGTGATCGT 204565 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || |||| || ||||| || || ||||| Sbjct 204566 TTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 204598 >seq32 Length=600051 Score = 107 bits (118), Expect = 2e-18 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || ||||| || | || || || ||||| || |||||||| Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA--G 35663 |||| || ||||| | | || | || ||| || || || || || |||| | | Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 35664 TTGCCACCGTGTCGCTCGAT-TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 ||| | ||||| | | | | |||||||| ||| || | ||| ||||||||||||||| Sbjct 414499 TTG--ATGGTGTC-CGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTC 414555 Query 35723 ACAAATATCTGCATTC 35738 ||||| || ||||||| Sbjct 414556 ACAAAAATTTGCATTC 414571 >seq202 Length=131032 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| ||||||| | | | | |||||||| ||| || |||||||| Sbjct 51413 CTCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCAAA 51472 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| || || || |||| ||| | ||| ||||| ||| || ||||| | Sbjct 51473 TATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACGTT 51532 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 || | ||| | || | || |||| || ||||| || || || || ||||| || || Sbjct 51533 CGCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTTAC 51592 Query 35725 AAATATCTG 35733 |||||||| Sbjct 51593 GAATATCTG 51601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450780943969680