Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq62 138 1e-27 seq9 138 1e-27 seq32 114 1e-20 seq234 87.8 2e-12 seq36 84.2 2e-11 >seq62 Length=411361 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || ||||| || | || | ||| || || || ||||| |||||||||||||| ||| Sbjct 311281 CCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 311340 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 ||| ||| | || |||||||||||||| ||||| |||| || |||||||| ||||| Sbjct 311341 AAC-GTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 311399 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || || || ||| | |||||| || ||||| Sbjct 311400 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCAC 311459 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | ||| || ||||| ||||| | || || |||||||||||||| Sbjct 311460 GTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 311507 >seq9 Length=1094565 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || ||||| || | || | ||| || || || ||||| |||||||||||||| ||| Sbjct 204372 CCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCC 204431 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 ||| ||| | || |||||||||||||| ||||| |||| || |||||||| ||||| Sbjct 204432 AAC-GTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 204490 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || || || ||| | |||||| || ||||| Sbjct 204491 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCAC 204550 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| | ||| || ||||| ||||| | || || |||||||||||||| Sbjct 204551 GTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 204598 >seq32 Length=600051 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||| || | ||| |||| || || || ||| | | |||||||||||||||||||| || Sbjct 414342 TCCGCCCCGGAGGCGCAGCAGCAGATGAAGCATTGCGTCCTTTTGAATGTTGTAGTCAGC 414401 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | || |||||||||||||| ||||| |||| || ||||| | | | Sbjct 414402 CAA-AGTGCCATCATCATCGAGCTGTTTGCCCGCAAAGATCAGTCGTTGCTGTTTAGTTG 414460 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| | | || | ||| ||||| || || | ||||| || | || Sbjct 414461 GGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTGTTGATGGTGTCCGAGCTGTGCA 414520 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || |||| ||| || || |||||||| || |||||||||||| Sbjct 414521 CCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCACAAAAATTTGCATT 414570 >seq234 Length=104851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || ||| ||| || || || || ||||| || |||||||||||| Sbjct 49158 CCACCACGGAGACGAGACATGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTC 49099 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | | | || ||| ||||||||||| || || || |||||| |||||||||| | ||| Sbjct 49098 AAAGCGAGACCGTCTTCGAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGA 49039 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 49038 ATGCCCTCCTTGTCATGGATCTT 49016 >seq36 Length=625759 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||||||||||||||| ||||| ||||| || || || || || ||| Sbjct 424717 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 424776 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | |||||| | || || || ||||| ||||| || ||||| | Sbjct 424777 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTGAGC 424836 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || || || |||||||||||| Sbjct 424837 GTCTTGACAAAAATTTGCATT 424857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505384210939920