Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq127 107 2e-18 >seq127 Length=223113 Score = 107 bits (118), Expect = 2e-18 Identities = 214/311 (69%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| | ||||||||| |||||||| || || |||||||||||||| || | Sbjct 209421 CCAGAAGCTAAGTTTTTTTATGGATTTCAAATAGCTATTGAAAATATTCATTCTGAGACT 209362 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAAT 44047 || | | | || || || || | || ||| || ||| ||||| || |||||| Sbjct 209361 TATTCTTTATTAATCGACACCTATGTTAAGGATTCACAAGAGCGCCATCGGTTATTTAAT 209302 Query 44048 GCGATAGAAAC-AGTACCTGCG--ATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA 44104 || || || || | | || | |||| |||||||| ||||| | ||||| Sbjct 209301 GCTATGGAGACGATTGAATGGGTAGGTAAA---AAAGCAGATTGGGCTTTGCGTTGGAT- 209246 Query 44105 AATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 | || | ||| |||| |||| | ||| | || ||||| | || || ||||| || Sbjct 209245 --TAGCAAGGGTTCCTTTGTAGAAAGGCTTATTGCTTTTGCTGCGGTAGAGGGCATCTTT 209188 Query 44165 TTTTCAGGATCGTTTGCG-GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||||| || | |||| | ||||| |||||| | || |||||||| | ||||| ||||| Sbjct 209187 TTTTCTGG-TAGTTTTTGTGCCATCTTTTGGCTTAAAAAACGAGGCCTAATGCCAGGGTT 209129 Query 44224 GACGTTTTCAA 44234 || ||||||| Sbjct 209128 AACCTTTTCAA 209118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445120387230