Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq62 120 9e-22 seq9 120 9e-22 seq127 107 6e-18 seq36 87.8 5e-12 seq400 86.0 2e-11 seq275 86.0 2e-11 seq97 86.0 2e-11 >seq62 Length=411361 Score = 120 bits (132), Expect = 9e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||||||||| || ||||| || || || | || || || ||||||| Sbjct 311298 GACCAAG-TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTT 311356 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || ||||| || |||||||| || |||||||||||||| || || || || || |||| Sbjct 311357 CGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCT 311416 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || |||| | || || || || || | || | || | Sbjct 311417 GGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTT 311476 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || ||||| ||||| Sbjct 311477 TGCCGGTCAGTGTCTTCACGAAAATTTGCAT 311507 >seq9 Length=1094565 Score = 120 bits (132), Expect = 9e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||||||||| || ||||| || || || | || || || ||||||| Sbjct 204389 GACCAAG-TGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTT 204447 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || ||||| || |||||||| || |||||||||||||| || || || || || |||| Sbjct 204448 CGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCT 204507 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || | || || || |||| | || || || || || | || | || | Sbjct 204508 GGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTT 204567 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || ||||| ||||| Sbjct 204568 TGCCGGTCAGTGTCTTCACGAAAATTTGCAT 204598 >seq127 Length=223113 Score = 107 bits (118), Expect = 6e-18 Identities = 207/298 (69%), Gaps = 12/298 (4%) Strand=Plus/Plus Query 223746 TTGAAAATGTTAATCCAGGCATTAAACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAG 223805 ||||||| ||||| || ||||||| |||| ||||| | |||||| || || |||||| Sbjct 209118 TTGAAAAGGTTAACCCTGGCATTAGGCCTCGTTTTTTAAGCCAAAAGATGGCACAAAAAC 209177 Query 223806 CTCCTGaaaaaaaTATACCTTCTACACAAGCAAACGCTACTAATCGTGT-TGCAAAATTT 223864 || |||||||| || || ||||| |||||| || | ||| | | | | |||| Sbjct 209178 TACCAGAAAAAAAGATGCCCTCTACCGCAGCAAAAGCAA-TAAGCCTTTCTACAAAG--- 209233 Query 223865 GAATCTTTGTCTCCTATCCATTTTAATGCCCAATCTGCTTTTTTCTTAATACAAGAAAAA 223924 ||| | ||| | ||||| || ||||||||||||||||| | || || Sbjct 209234 GAACCCTTG---CTAATCCAACGCAAAGCCCAATCTGCTTTTTTACCTACCCATTCAATC 209290 Query 223925 TTTTCTAAAGCATTAAACAACTTCGATTTCTCA-TTATGATCACTTAT-ATATGTTTCTA 223982 | || | ||||||||| ||| |||| | | || ||| |||| ||| || || | Sbjct 209291 GTCTCCATAGCATTAAATAAC--CGATGGCGCTCTTGTGAATCCTTAACATAGGTGTCGA 209348 Query 223983 TTAATTGACTATACATTATTGAATGTATATTTTCCATTGCTATTTGAAATCCATAAAA 224040 ||||| | ||| | ||||| |||||||| || |||||||||||||||||||| Sbjct 209349 TTAATAAAGAATAAGTCTCAGAATGAATATTTTCAATAGCTATTTGAAATCCATAAAA 209406 >seq36 Length=625759 Score = 87.8 bits (96), Expect = 5e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| | ||| |||||||| || ||||| || || || ||||| || || || Sbjct 424717 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 424776 Query 140658 TTTACATTATCAATCGAATCAGATGGT-TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || || || || | || | ||| ||||| || || || | ||||||||||| || Sbjct 424777 TTCACGTTCTCGATGGTGTC-GCTGGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTGAG 424835 Query 140717 TGTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 424836 CGTCTTGACAAAAATTTGCATT 424857 >seq400 Length=47941 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||| ||||| || || || || || || || || | || | | || ||| Sbjct 29942 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 29883 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| || |||||||| || |||||||| || ||||| || || |||||| Sbjct 29882 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCC 29823 Query 140646 TGAAT 140650 || || Sbjct 29822 TGGAT 29818 >seq275 Length=99064 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||| ||||| || || || || || || || || | || | | || ||| Sbjct 19853 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 19794 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| || |||||||| || |||||||| || ||||| || || |||||| Sbjct 19793 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCC 19734 Query 140646 TGAAT 140650 || || Sbjct 19733 TGGAT 19729 >seq97 Length=302941 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||||||||| ||||| || || || || || || || || | || | | || ||| Sbjct 46102 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 46161 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || ||||| || |||||||| || |||||||| || ||||| || || |||||| Sbjct 46162 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCC 46221 Query 140646 TGAAT 140650 || || Sbjct 46222 TGGAT 46226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515210795713538