Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 102 9e-17 >seq4 Length=1352950 Score = 102 bits (112), Expect = 9e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||||||||| || ||||| ||||| ||| || |||||||| |||||| Sbjct 596814 GAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGATTTCGGTGCAC 596873 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 ||||| || | || |||||||| | ||| | ||| || |||| || || |||||| Sbjct 596874 AAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATTGCACGCGTCC 596933 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || | ||||||||||||| |||||||| Sbjct 596934 TTAAACAACATGTACGGCGTGCCGGTCTC 596962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 20609 CCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATC 20668 || ||| || |||||||| | |||||||| || |||||||| || || ||| || | Sbjct 675442 CCGCAGCACATCAAGGACCTGTACAGGACGGTGTGGGAAATTCCGCAAAAGGATATTCTG 675501 Query 20669 GACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATG 20728 || ||||| ||||| || | ||| | ||||||||| ||| ||||| || | ||| Sbjct 675502 GAAATGGCTGCCGACCGTGCCGCGTTCATCGACCAAAGCCAATCGCTGAACATTCACATT 675561 Query 20729 GAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 | | | |||| || || |||||||||||||| | |||| |||| Sbjct 675562 GCGCAGCCGAATTATGCAAAACTGAGCTCCATGCACTTCTACGCCTGG 675609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509400166240