Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq39 87.8 2e-12 >seq39 Length=501744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||| ||||| || | || | ||||| || ||| || || || ||||||| Sbjct 83722 GCGTGAAAATGTAACGTGGTGAAGCTGAGTCCTTTCCGCCTTGAAGTCGAGTACCAAACT 83781 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | ||| |||| | | ||| | |||||||| || || |||||||| |||||||||| Sbjct 83782 GACCAATGGGCAGCAACAAGTTTATGTTGTTGGAACCAACAAAATTCTGTGCCAAATTCA 83841 Query 152147 CAATCGTGCCCTGCA--GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 | |||||| | || |||| || || |||||||||||||||| | || ||| Sbjct 83842 CTATCGTGGACATCAGCGACT-GC-TCCCCGTGGTGATACGCCGACATTTCGCCGACAGC 83899 Query 152205 TCCCGCCAACTGCGCCACCTT 152225 ||| |||||||| || || || Sbjct 83900 TCCGGCCAACTGAGCAACTTT 83920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200636910800