Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq36 131 2e-25 seq62 107 2e-18 seq9 107 2e-18 seq400 86.0 7e-12 seq275 86.0 7e-12 seq97 86.0 7e-12 >seq4 Length=1352950 Score = 136 bits (150), Expect = 5e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||||||||| ||||||||||| || ||||| ||||| ||| | | Sbjct 417660 AATGCAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTCGAGGTCGAGGCCAG 417719 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 417720 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCA 417779 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||||| || ||||| ||| || Sbjct 417780 GCAGCGTCTGATCTTTGCCGGTCAG 417804 Score = 129 bits (142), Expect = 7e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || |||||||| || ||||||||||| || ||| | ||||| ||| | Sbjct 416452 ATCATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCC 416511 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||| | || ||||||| || || |||||||||||||| ||||| || ||| Sbjct 416512 AGCGATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGAC 416571 Query 27523 CAGCAGCGTCTAATTTTTGCTGGT 27546 ||||||||||| || ||||| ||| Sbjct 416572 CAGCAGCGTCTGATCTTTGCCGGT 416595 Score = 127 bits (140), Expect = 2e-24 Identities = 114/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || ||||||||||| || ||| | ||||| ||| ||| Sbjct 417381 AATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCAGC 417440 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 417441 -GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCA 417499 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| || ||||| ||| Sbjct 417500 GCAGCGTCTGATCTTTGCCGGT 417521 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || |||||||| || ||||||||||| || ||| | ||||| ||| | Sbjct 415779 ATCATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCC 415720 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | || ||||||| || || |||||||||||||| ||||| || ||| Sbjct 415719 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGAC 415660 Query 27523 CAGCAGCGTCTAATTTTTGCTGG 27545 ||||||||||| || ||||| || Sbjct 415659 CAGCAGCGTCTGATCTTTGCCGG 415637 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| || ||||||||||| || ||| | ||||| ||| | | Sbjct 417101 AATGCAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAG 417160 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || |||||||||||||| ||||| || || || Sbjct 417161 CGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCA 417220 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||||| || ||||| ||| Sbjct 417221 GCAGCGTCTGATCTTTGCCGGT 417242 Score = 113 bits (124), Expect = 5e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || ||||||||||| || ||| | ||||| ||| | | |||| ||| Sbjct 416828 TTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGCGATACCATC 416887 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || ||||||| || || |||||||||||||| ||||| || || ||||||||||| Sbjct 416888 GAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAGCAGCGTCTG 416947 Query 27535 ATTTTTGCTGGT 27546 || ||||| ||| Sbjct 416948 ATCTTTGCCGGT 416959 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 ||| |||| |||||||| || ||| || | | | | || | |||||| ||||| Sbjct 596813 GGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAATATTCAATGATTTCGGTGCA 596872 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 |||||| || | || || || |||| ||||| ||| |||||||| ||||| ||||| Sbjct 596873 CAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATTGCACGCGTC 596932 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATG 81075 ||| | |||||||||| || |||||||| ||| || ||| |||| Sbjct 596933 CTTAAACAACATGTACGGCGTGCCGGTCTCCGTCTGCGAACTGATGATG 596981 >seq36 Length=625759 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||||||||| ||||| ||||| || ||||| ||||||||| | | Sbjct 424857 AATGCAAATTTTTGTCAAGACGCTCACCGGAAAGACCATCACTCTGGAGGTTGAGGCCAG 424798 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || |||||||||||||| ||||| || || || Sbjct 424797 CGACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 424738 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||| | || ||||| ||| Sbjct 424737 GCAGCGTTTGATCTTTGCCGGT 424716 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||| | | Sbjct 425130 AATGCAAATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTTGAGGCCAG 425071 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || ||||||| || || |||||||||||||| ||||| || || || Sbjct 425070 CGACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 425011 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 ||||||| | || || || ||| Sbjct 425010 GCAGCGTTTGATCTTCGCCGGT 424989 Score = 125 bits (138), Expect = 8e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || |||||||||||||||||||| || ||||| ||||||||| | Sbjct 425405 ATCATGCAGATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTCTGGAGGTTGAGGCC 425346 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || | ||| | ||| ||||||| || || |||||||||||||| ||||| || || Sbjct 425345 AGCGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGAT 425286 Query 27523 CAGCAGCGTCTAATTTTTGCTGGT 27546 |||||||| | || ||||| ||| Sbjct 425285 CAGCAGCGCTTGATCTTTGCCGGT 425262 >seq62 Length=411361 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || |||||||| || || ||| | || || ||| || | Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAG--AGTT 311450 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| || ||||| | || || |||||||||||||| || || || || | Sbjct 311449 CGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 311390 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || || || ||||| || || || ||||| |||| || || | || ||||| | Sbjct 311389 AGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACA 311330 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | | || ||||| || |||||||| Sbjct 311329 ACATTCAGAAGGAGTCTACTCTTCA 311305 >seq9 Length=1094565 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || |||||||| || || ||| | || || ||| || | Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAG--AGTT 204541 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| || ||||| | || || |||||||||||||| || || || || | Sbjct 204540 CGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 204481 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||| || || || ||||| || || || ||||| |||| || || | || ||||| | Sbjct 204480 AGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACA 204421 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | | || ||||| || |||||||| Sbjct 204420 ACATTCAGAAGGAGTCTACTCTTCA 204396 >seq400 Length=47941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| |||||||| ||||| || || ||||| || ||||| || || || ||||| Sbjct 29818 ATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCAG 29877 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 ||||| || | || | | | ||||| || |||| |||||||||||||| ||||| Sbjct 29878 CTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCTT 29937 Query 27613 GT 27614 || Sbjct 29938 GT 29939 >seq275 Length=99064 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| |||||||| ||||| || || ||||| || ||||| || || || ||||| Sbjct 19729 ATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCAG 19788 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 ||||| || | || | | | ||||| || |||| |||||||||||||| ||||| Sbjct 19789 CTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCTT 19848 Query 27613 GT 27614 || Sbjct 19849 GT 19850 >seq97 Length=302941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| |||||||| ||||| || || ||||| || ||||| || || || ||||| Sbjct 46226 ATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCAG 46167 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 ||||| || | || | | | ||||| || |||| |||||||||||||| ||||| Sbjct 46166 CTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCTT 46107 Query 27613 GT 27614 || Sbjct 46106 GT 46105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294388535520