Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq202 93.3 4e-14 seq62 91.5 1e-13 seq9 91.5 1e-13 >seq202 Length=131032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/230 (70%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA-ACC-GTCCG 27048 |||||||| ||||| ||| | ||||| ||| | || ||||| | || || ||| || Sbjct 51601 CAGATATTCGTAAAGACTTTCACCGGGAAGACCATCACTCTGAAGGTTGAGACCAGTGGC 51542 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 ||| || | || || || ||||| || |||||||| || || | || || |||| Sbjct 51541 ACT--ATCGCGAACGTGAAGACCAAAATCCATGACAAAGAGGGGATTCGGCCGGAGCAAC 51484 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | || | |||| || || ||||| ||||| |||| | | ||| |||| ||||||| Sbjct 51483 AACGACTGATATTTGCGGGGAAACAGTTGGACGACATGTGCAGCGTGGCCGACTACAACA 51424 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGG-GGTGGC 27215 ||||||||||||| | | | ||| | ||||| | ||||| |||||| Sbjct 51423 TTCAAAAGGAGTCTAACCTCCATCTAACGTTGCGGTTGTGCGGAGGTGGC 51374 >seq62 Length=411361 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||||||||| | || ||| | || ||||| || Sbjct 311508 CATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTC 311449 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||| | || || || || || ||||| || ||||| || || ||||| Sbjct 311448 GGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 311389 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACA 27165 || || | || | ||||||||||| | ||||| | || |||| |||| |||| Sbjct 311388 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGC-CGCACGTTGGCCGACTACA 311330 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| || | || ||||| | || | |||| ||||| Sbjct 311329 ACATTCAGAAGGAGTCTACTCTTCACTTGGTCCTTCGCCTCAGGGGCGGCAT 311278 >seq9 Length=1094565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||||||||| | || ||| | || ||||| || Sbjct 204599 CATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTC 204540 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | |||| | || || || || || ||||| || ||||| || || ||||| Sbjct 204539 GGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 204480 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT-CCGATTACA 27165 || || | || | ||||||||||| | ||||| | || |||| |||| |||| Sbjct 204479 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGC-CGCACGTTGGCCGACTACA 204421 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| || | || ||||| | || | |||| ||||| Sbjct 204420 ACATTCAGAAGGAGTCTACTCTTCACTTGGTCCTTCGCCTCAGGGGCGGCAT 204369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434906189665920