Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq62 107 1e-18 seq9 107 1e-18 >seq62 Length=411361 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || |||||||||||| | || || || || Sbjct 311507 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 311448 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| || | || || || | | ||||| || || | ||||| ||||| Sbjct 311447 GACACAGTTGACAACGTGAAGACGAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGATCA 311389 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || |||||||||||||| || ||||| | ||||| || | ||| ||||| Sbjct 311388 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAA 311329 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 311328 CATTCAGAAGGAGTCTAC 311311 >seq9 Length=1094565 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || |||||||||||| | || || || || Sbjct 204598 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCG 204539 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||||| || | || || || | | ||||| || || | ||||| ||||| Sbjct 204538 GACACAGTTGACAACGTGAAGACGAAGA-TCCAGGACAAGGAGGGCATCCCGCCTGATCA 204480 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || || | || |||||||||||||| || ||||| | ||||| || | ||| ||||| Sbjct 204479 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAA 204420 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 204419 CATTCAGAAGGAGTCTAC 204402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338000347620968