Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq32 116 9e-21 seq400 111 4e-19 seq275 111 4e-19 seq97 111 4e-19 seq4 95.1 3e-14 seq46 87.8 4e-12 seq202 86.0 1e-11 seq36 84.2 5e-11 >seq32 Length=600051 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || ||||| | ||||| || |||||||| | |||| || ||||| || || || ||| Sbjct 414379 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAG 414438 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || |||||||| || | | || || |||||| || | |||| || || |||||| Sbjct 414439 ATCAGTCGTTGCTGTTTAGTTGGGATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTG 414498 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 | ||||||||| ||| | | ||| || | ||| || | || |||||||||||||| | Sbjct 414499 TTGATGGTGTCCGAGCTGTGCACCTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCACA 414558 Query 225703 AACACTTGCATTTTATGGTTACTTACCGCCTG 225734 || | ||||||| |||| ||||| || ||| Sbjct 414559 AAAATTTGCATTCCATGGCAACTTAACGACTG 414590 >seq400 Length=47941 Score = 111 bits (122), Expect = 4e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| |||||||||||||| || |||| ||||| |||| ||||| || ||| Sbjct 29942 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 29883 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| ||||| || || || |||||||| || ||||| || Sbjct 29882 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCC 29823 Query 225622 TGGATC 225627 |||||| Sbjct 29822 TGGATC 29817 >seq275 Length=99064 Score = 111 bits (122), Expect = 4e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| |||||||||||||| || |||| ||||| |||| ||||| || ||| Sbjct 19853 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 19794 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| ||||| || || || |||||||| || ||||| || Sbjct 19793 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCC 19734 Query 225622 TGGATC 225627 |||||| Sbjct 19733 TGGATC 19728 >seq97 Length=302941 Score = 111 bits (122), Expect = 4e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| |||||||||||||| || |||| ||||| |||| ||||| || ||| Sbjct 46102 AGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGTCAAAGCGTGACCGTCT 46161 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| ||||| || || || |||||||| || ||||| || Sbjct 46162 TCGAGCTGCTTTCCGGCGAAGATTAGTCGATGCTGATCCGGCGGAATGCCCTCCTTATCC 46221 Query 225622 TGGATC 225627 |||||| Sbjct 46222 TGGATC 46227 >seq4 Length=1352950 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| || || || ||||| |||||||| || |||||||| |||||||| | Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| || || || || || ||||| |||||||| || | | Sbjct 415697 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 415756 Query 225694 GTTTTTATGAACACTTGCAT 225713 || || | ||| | |||||| Sbjct 415757 GTCTTGACGAAAATTTGCAT 415776 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| || || || || || |||||||| || |||||||| |||||||| | Sbjct 417241 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417182 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| || || || || || ||||| |||||||| || | | Sbjct 417181 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417122 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 417121 GTCTTGACGAAAATTTGCATT 417101 Score = 93.3 bits (102), Expect = 1e-13 Identities = 106/141 (75%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| || || || ||||| |||||||| || |||||||| |||||||| | Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| | | || || || || ||||| |||||||| || | | Sbjct 417460 TTCACGTTCTCGATGGTGTC-GCTGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417402 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 417401 GTCTTGACGAAAATTTGCATT 417381 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || ||||| || || || ||||| |||||||| || |||||||| |||||||| | Sbjct 417800 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417741 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| || || || || | ||||| |||||||| || | Sbjct 417740 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGC 417681 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | ||| | ||||||| Sbjct 417680 GTCTTGACGAAAATTTGCATT 417660 >seq46 Length=505893 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || |||||||||||||| | ||| ||||||||| |||| | | ||| || Sbjct 397479 ACGAGATGGAGAGTGGATTCCTCCCGGATGTTGTAATCGAACAAAATATGACGATCATCA 397420 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 ||||| || || |||||||| | || || || || | |||||| || ||||| || ||| Sbjct 397419 AGCTGTTTTCCGGCGAAGATCAAACGCTGCTGATCAGACGGAATGCCCTCCTTATCCTGG 397360 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 ||||| |||||| || |||| |||| ||| Sbjct 397359 ATCTTGGCCTTCACTTTTTGGATGATGTCGGAG 397327 >seq202 Length=131032 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 || ||||| | || || ||||| | ||||| ||||||| | | | || || | | Sbjct 51399 AGATGGAGGTTAGACTCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAAC 51458 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 || ||||| || || || ||||||||||| || ||| |||| || || ||||| ||||| Sbjct 51459 TGTTTCCCCGCAAATATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATT 51518 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || |||||| |||| ||| | ||| || || | | ||||| ||||| || Sbjct 51519 TTGGTCTTCACGTTCGCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCG 51578 Query 225688 GTCAAAGTTTTTATGAA 225704 || ||||| |||| ||| Sbjct 51579 GTGAAAGTCTTTACGAA 51595 >seq36 Length=625759 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | || || || || |||||||| || |||||||| ||||||||| | Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||||||||| || || || || | ||||| |||||||| || | Sbjct 425050 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGC 425109 Query 225694 GTTTTTATGAACACTTGCATT 225714 || || | || | ||||||| Sbjct 425110 GTCTTGACAAAAATTTGCATT 425130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192496882678724