Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq62 154 3e-32 seq9 154 3e-32 seq4 129 1e-24 seq36 114 3e-20 seq202 105 1e-17 seq234 100 6e-16 seq32 100 6e-16 seq703 95.1 3e-14 seq555 95.1 3e-14 seq551 95.1 3e-14 >seq62 Length=411361 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 |||||||| |||| || | || || || || ||||||||||| || | ||||||| Sbjct 311290 AGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGG 311349 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || ||||| ||||||||||||| ||||| || ||| ||| || |||||| Sbjct 311350 CCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCC 311409 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| | || ||| | || | ||||||||| || || || | |||| Sbjct 311410 TTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTG 311469 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || |||| ||||| ||||| || ||||| Sbjct 311470 ATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 311507 >seq9 Length=1094565 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 |||||||| |||| || | || || || || ||||||||||| || | ||||||| Sbjct 204381 AGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGG 204440 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||| || || ||||| ||||||||||||| ||||| || ||| ||| || |||||| Sbjct 204441 CCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCC 204500 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||| |||||||| | || ||| | || | ||||||||| || || || | |||| Sbjct 204501 TTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTG 204560 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || |||| ||||| ||||| || ||||| Sbjct 204561 ATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 204598 >seq4 Length=1352950 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || |||||| |||||| ||||||||||| |||||||| || Sbjct 417800 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417741 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| ||||||||||| ||||| || || | Sbjct 417740 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGC 417681 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 417680 GTCTTGACGAAAATTTGCATT 417660 Score = 125 bits (138), Expect = 1e-23 Identities = 113/141 (80%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || |||||| |||||| ||||||||||| |||||||| || Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| |||| || || ||||| || | |||||| ||||| || || | | Sbjct 417460 TTCACGTTCTCGATGGTGT-CGCTGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417402 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 417401 GTCTTGACGAAAATTTGCATT 417381 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || |||||| |||||| ||||||||||| |||||||| || Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || | |||||| ||||| || || | | Sbjct 415697 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 415756 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 415757 GTCTTGACGAAAATTTGCAT 415776 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || || ||| |||||| ||||||||||| |||||||| || Sbjct 417241 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417182 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || ||||| || | |||||| ||||| || || | | Sbjct 417181 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 417122 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| ||||| || |||||| Sbjct 417121 GTCTTGACGAAAATTTGCATT 417101 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || |||||| |||||| ||||||||||| |||||||| || Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| || || || ||||| || | |||||| ||||| || || | | Sbjct 416534 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416475 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 416474 GTCTTGACGAAAATTTGCAT 416455 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || || ||| |||||| ||||||||||| |||||||| || Sbjct 416958 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416899 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| || || || ||||| || | |||||| ||||| || || | | Sbjct 416898 TTCACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGA 416839 Query 283080 GTCTTAACGAA 283090 ||||| ||||| Sbjct 416838 GTCTTGACGAA 416828 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||| ||| || |||||| |||||| ||||||||||| |||||||| || Sbjct 415543 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415602 Query 283020 TTTACGGTATCGATAGTGTC 283039 || ||| | ||||| ||||| Sbjct 415603 TTCACGTTCTCGATGGTGTC 415622 >seq36 Length=625759 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||||||||||||||| || || || |||||| ||||||||||| ||||||||||| Sbjct 424717 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 424776 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || || |||||||| ||||| || || | Sbjct 424777 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTGAGC 424836 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || || |||||| Sbjct 424837 GTCTTGACAAAAATTTGCATT 424857 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||||||||| || || || || |||||| ||||||||||| ||||||||||| Sbjct 425263 CCGGCAAAGATCAAGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425322 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | ||||| ||||| || || || || |||||||| ||||| || || | Sbjct 425323 TTCACATTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGC 425382 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| Sbjct 425383 GTCTTCACGAAAATCTGCAT 425402 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 ||||| ||||||||||| || || || |||||| ||||||||||| ||||||||||| Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425049 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || ||| | ||||| ||||| || || || || |||||||| ||||| || || | Sbjct 425050 TTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAGC 425109 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||| || || || |||||| Sbjct 425110 GTCTTGACAAAAATTTGCATT 425130 >seq202 Length=131032 Score = 105 bits (116), Expect = 1e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||||||||| || | ||| || || | |||||||| ||||| Sbjct 51414 TCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCAAAT 51473 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| |||||||| || | |||| ||||| ||||| ||||| || | || ||| | Sbjct 51474 ATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACGTTC 51533 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 |||||||| | | || || | |||||||| ||||| || || |||||||| ||| Sbjct 51534 GCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTTACG 51593 Query 283089 AATATCTG 283096 |||||||| Sbjct 51594 AATATCTG 51601 >seq234 Length=104851 Score = 100 bits (110), Expect = 6e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||| | ||||| | || || || |||||||||||||| | Sbjct 49158 CCACCACGGAGACGAGACATGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTC 49099 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | | | | || || || || ||||| ||||| ||||||||| | || || ||| |||| Sbjct 49098 AAAGCGAGACCGTCTTCGAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGA 49039 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 || ||||||||||| |||||||| || || || | | ||||||||| || Sbjct 49038 ATGCCCTCCTTGTCATGGATCTTGGCCTTCACTTTTTGGATAGTGTCGGA 48989 >seq32 Length=600051 Score = 100 bits (110), Expect = 6e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || | |||||| | | | || ||||| |||||||||||||| Sbjct 414343 CCGCCCCGGAGGCGCAGCAGCAGATGAAGCATTGCGTCCTTTTGAATGTTGTAGTCAGCC 414402 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||| |||| || || ||||| || |||||||||| ||||| || | | || Sbjct 414403 AAAGTGCCATCATCATCGAGCTGTTTGCCCGCAAAGATCAGTCGTTGCTGTTTAGTTGGG 414462 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || || ||| || | |||| || ||| || | | ||| ||||||| |||| | || Sbjct 414463 ATGCCTTCCATGGCCTGGACTTTCTGTTTCACATTGTTGATGGTGTCCG-AGCTGTGCAC 414521 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || | || ||||||||||| || || || || |||||| Sbjct 414522 CTCCAGCGTCATGGCTTTTCCCGTCAAAGTTTTCACAAAAATTTGCATT 414570 >seq703 Length=10658 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | | || ||||| | || || || |||||||||||||| | Sbjct 8148 CCACCACGGAGACTAGCCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTC 8207 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | | | | ||| || || ||||| ||||| ||||||||| | || || ||| |||| Sbjct 8208 AAAATATGACGATCATCAAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGA 8267 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 || ||||||||||| |||||||| || || || | | ||||||||| || Sbjct 8268 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACTTTTTGGATAGTGTCGGA 8317 >seq555 Length=21539 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | | || ||||| | || || || |||||||||||||| | Sbjct 4633 CCACCACGGAGACTAGCCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTC 4692 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | | | | ||| || || ||||| ||||| ||||||||| | || || ||| |||| Sbjct 4693 AAAATATGACGATCATCAAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGA 4752 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 || ||||||||||| |||||||| || || || | | ||||||||| || Sbjct 4753 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACTTTTTGGATAGTGTCGGA 4802 >seq551 Length=22149 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || | | || ||||| | || || || |||||||||||||| | Sbjct 17517 CCACCACGGAGACTAGCCACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGTC 17458 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | | | | ||| || || ||||| ||||| ||||||||| | || || ||| |||| Sbjct 17457 AAAATATGACGATCATCAAGCTGTTTTCCGGCGAAGATCAAAAGCTGCTGATCAGACGGA 17398 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGA 283042 || ||||||||||| |||||||| || || || | | ||||||||| || Sbjct 17397 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACTTTTTGGATAGTGTCGGA 17348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046709078116884