Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq62 109 4e-19 seq9 109 4e-19 seq36 104 2e-17 seq4 102 6e-17 >seq62 Length=411361 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| || |||||||| ||||| | ||| | || || Sbjct 311299 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 311358 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||||||||||| || |||||||| | || | || ||||| ||| Sbjct 311359 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 311418 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | | ||||| | ||||| |||| || ||||| || Sbjct 311419 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTG 311478 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||||||||| ||||||||| Sbjct 311479 CCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| || |||||||| ||||| | ||| | || || Sbjct 204390 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCATCTTCG 204449 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||||||||||| || |||||||| | || | || ||||| ||| Sbjct 204450 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 204509 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | | ||||| | ||||| |||| || ||||| || Sbjct 204510 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACGTCCAAAGTGATCGTTTTG 204569 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||||||||| ||||||||| Sbjct 204570 CCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 >seq36 Length=625759 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||||||||||||||| | || | || ||||| ||| ||||| ||| Sbjct 424717 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTT-TGC 424775 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | |||| | ||||||||| || || ||||||| || || |||||||| ||||| Sbjct 424776 CTTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTGAG 424835 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| Sbjct 424836 CGTCTTGACAAAAATTTGCAT 424856 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||||||||| ||||||||||| | || | || ||||| ||| ||||| | Sbjct 425263 CCGGCAAAGATCAAGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425322 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| | | ||||||||| || || ||||||| || || ||||| || || || Sbjct 425323 TTCACATTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGC 425382 Query 44318 GTCTTCACGAAGATTTGCATGATG 44341 ||||||||||| || ||||||||| Sbjct 425383 GTCTTCACGAAAATCTGCATGATG 425406 Score = 95.1 bits (104), Expect = 9e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||||||||||||||| | || | || ||||| ||| ||||| ||| Sbjct 424990 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTT-TGC 425048 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | |||| | ||||||||| || || ||||||| || || ||||| || ||||| Sbjct 425049 CTTCACGTTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTGAG 425108 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| Sbjct 425109 CGTCTTGACAAAAATTTGCAT 425129 >seq4 Length=1352950 Score = 102 bits (112), Expect = 6e-17 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| ||||||||| || | || | || ||||| ||| ||||| | Sbjct 415637 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 415696 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| | |||| | ||||||||| || || ||||||| || || ||||| || ||||| Sbjct 415697 TTC-ACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 415755 Query 44317 GGTCTTCACGAAGATTTGCATGATG 44341 ||||| ||||| |||||||||||| Sbjct 415756 AGTCTTGACGAAAATTTGCATGATG 415780 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| |||||||||||| | || | || ||||| ||| ||||| | Sbjct 417241 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417182 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| | |||| | ||||||||| || || ||||||| || || ||||| || ||||| Sbjct 417181 TTC-ACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 417123 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| Sbjct 417122 AGTCTTGACGAAAATTTGCAT 417102 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| ||||||||| || | || | || ||||| ||| ||||| | Sbjct 416594 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416535 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| |||| | ||||| ||| || || ||||||| || || ||||| || ||||| Sbjct 416534 TTCAC-GTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 416476 Query 44317 GGTCTTCACGAAGATTTGCATGATG 44341 ||||| ||||| |||||||||||| Sbjct 416475 AGTCTTGACGAAAATTTGCATGATG 416451 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| ||||||||| || | || | || ||||| ||| ||||| | Sbjct 417520 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417461 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| | |||| | |||||||| || | || ||||||| || || ||||| || ||||| Sbjct 417460 TTC-ACGTTCTCGATGGTGTC-GCTGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 417403 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| Sbjct 417402 AGTCTTGACGAAAATTTGCAT 417382 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| ||||||||| || | || | || ||||| ||| ||||| | Sbjct 417800 CCGGCAAAGATCAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 417741 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| | |||| | ||||||||| || || ||||| | || || ||||| || ||||| Sbjct 417740 TTC-ACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAG 417682 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| Sbjct 417681 CGTCTTGACGAAAATTTGCAT 417661 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||||| |||||||||||| | || | || ||||| ||| ||||| | Sbjct 416958 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCC 416899 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| | |||| | ||||| ||| || || ||||||| || || ||||| || ||||| Sbjct 416898 TTC-ACGTTCTCGATGGTATCGCTGGCCTCGACCTCCAAAGTGATGGTCTTGCCGGTGAG 416840 Query 44317 GGTCTTCACGAA 44328 ||||| ||||| Sbjct 416839 AGTCTTGACGAA 416828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980545937782