Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq62 145 2e-29 seq9 145 2e-29 seq32 136 1e-26 seq4 107 5e-18 seq36 104 6e-17 seq400 98.7 2e-15 seq275 98.7 2e-15 seq97 98.7 2e-15 >seq62 Length=411361 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||||||||| | || ||||| || || ||| Sbjct 311504 CAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCGGAC 311445 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| || ||||| |||||||| || || ||||| || || |||||| Sbjct 311444 ACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAA 311385 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||||||||||||||| | || | ||||| || ||| | Sbjct 311384 CGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAACATT 311325 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 311324 CAGAAGGAGTCTACTCTTCA-CTTG 311301 >seq9 Length=1094565 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || ||||||||||| | || ||||| || || ||| Sbjct 204595 CAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGACGTGGAGAGTTCGGAC 204536 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || ||||| || ||||| |||||||| || || ||||| || || |||||| Sbjct 204535 ACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAA 204476 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||||||||||||||| | || | ||||| || ||| | Sbjct 204475 CGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGTTGGCCGACTACAACATT 204416 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 204415 CAGAAGGAGTCTACTCTTCA-CTTG 204392 >seq32 Length=600051 Score = 136 bits (150), Expect = 1e-26 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||| | || |||||| | || || || |||||| | ||||| ||| Sbjct 414566 CAAATTTTTGTGAAAACTTTGACGGGAAAAGCCATGACGCTGGAGGTGCACAGCTCGGAC 414507 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||| | || || ||||| || | |||| || ||||| ||||| | | |||||| Sbjct 414506 ACCATCAACAATGTGAAACAGAAAGTCCAGGCCATGGAAGGCATCCCAACTAAACAGCAA 414447 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || ||||||||||| |||| | ||| | || || || ||| | Sbjct 414446 CGACTGATCTTTGCGGGCAAACAGCTCGATGATGATGGCACTTTGGCTGACTACAACATT 414387 Query 178104 CAAAAAGAATCAACACTGCATCT 178126 ||||| || ||| || ||||| Sbjct 414386 CAAAAGGACGCAATGCTTCATCT 414364 >seq4 Length=1352950 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || || || ||||| |||||||| || | ||| Sbjct 417664 CAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTCGAGGTCGAGGCCAGCGAC 417723 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 417724 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 417783 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 417784 CGTCTGATCTTTGCCGG 417800 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| | ||||| || | ||| Sbjct 415773 CAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGCGAC 415714 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 415713 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 415654 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 415653 CGTCTGATCTTTGCCGG 415637 Score = 104 bits (114), Expect = 6e-17 Identities = 106/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| | ||||| || || ||| Sbjct 417385 CAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAG-GCAGCGAC 417443 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 417444 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 417503 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 417504 CGTCTGATCTTTGCCGG 417520 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| | ||||| || | || Sbjct 416458 CAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGCGAT 416517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 416518 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAG 416577 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 416578 CGTCTGATCTTTGCCGG 416594 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| | ||||| || | ||| Sbjct 417105 CAAATTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGCGAC 417164 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| |||||||| || || || || || || ||||| Sbjct 417165 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAGCAG 417224 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 417225 CGTCTGATCTTTGCCGG 417241 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 ||||||| || |||||||| || || || ||||| | ||||| || | || |||| Sbjct 416826 TTTTCGTCAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGGCCAGCGATACCA 416885 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 |||||||||| || ||||| |||||||| || || || || || || ||||| || | Sbjct 416886 TCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAGCAGCGTC 416945 Query 178048 TTATCTTCGCCGG 178060 | ||||| ||||| Sbjct 416946 TGATCTTTGCCGG 416958 >seq36 Length=625759 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| ||||| || ||||| || ||||| || | ||| Sbjct 424853 CAAATTTTTGTCAAGACGCTCACCGGAAAGACCATCACTCTGGAGGTTGAGGCCAGCGAC 424794 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| || || || || ||||| ||||| Sbjct 424793 ACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAGCAG 424734 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 424733 CGTTTGATCTTTGCCGG 424717 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| || || || ||||| || ||||| || | ||| Sbjct 425126 CAAATTTTTGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTTGAGGCCAGCGAC 425067 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || |||||| |||||||| || || || || ||||| ||||| Sbjct 425066 ACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAGCAG 425007 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 425006 CGTTTGATCTTCGCCGG 424990 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 425399 CAGATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTCTGGAGGTTGAGGCCAGCGAC 425340 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||| |||||||| || || || || ||||| ||||| Sbjct 425339 ACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAGCAG 425280 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| ||||| Sbjct 425279 CGCTTGATCTTTGCCGG 425263 >seq400 Length=47941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||| ||||| || || || || || ||||| ||||| ||||| |||||||||||||| || Sbjct 29817 GATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCA 29876 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 ||||||||| || || | |||| || ||| |||| || ||||| || || ||||| Sbjct 29877 GCTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCT 29936 Query 178127 TGTT 178130 |||| Sbjct 29937 TGTT 29940 >seq275 Length=99064 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||| ||||| || || || || || ||||| ||||| ||||| |||||||||||||| || Sbjct 19728 GATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCA 19787 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 ||||||||| || || | |||| || ||| |||| || ||||| || || ||||| Sbjct 19788 GCTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCT 19847 Query 178127 TGTT 178130 |||| Sbjct 19848 TGTT 19851 >seq97 Length=302941 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||| ||||| || || || || || ||||| ||||| ||||| |||||||||||||| || Sbjct 46227 GATCCAGGATAAGGAGGGCATTCCGCCGGATCAGCATCGACTAATCTTCGCCGGAAAGCA 46168 Query 178067 GCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 ||||||||| || || | |||| || ||| |||| || ||||| || || ||||| Sbjct 46167 GCTCGAAGACGGTCACGCTTTGACCGACTACAACATCCAGAAGGAATCCACTCTCCATCT 46108 Query 178127 TGTT 178130 |||| Sbjct 46107 TGTT 46104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203696560377724