Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20ellingtonae_20[genbank_20GCA_5F001723225.1_202016-09-12] 2,246 sequences; 105,964,814 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq62 125 7e-24 seq9 125 7e-24 seq36 96.9 3e-15 seq202 93.3 4e-14 >seq62 Length=411361 Score = 125 bits (138), Expect = 7e-24 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | |||| || || || ||||||||||||||| ||||||| Sbjct 311280 GCCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGC 311339 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||| |||||||| || ||||| || || || || | || Sbjct 311340 CAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 311399 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CT 41810 | || |||||||||| ||| || |||| ||| | | || ||||| ||| || Sbjct 311400 GATGCCCTCCTTGTCCTGGATCTTCGTCTTC-ACGTTGTCAACTGTGTC---CGAACTCT 311455 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| |||| || |||||||| || ||||| ||||| |||||||| |||||| Sbjct 311456 CCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 311508 >seq9 Length=1094565 Score = 125 bits (138), Expect = 7e-24 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | |||| || || || ||||||||||||||| ||||||| Sbjct 204371 GCCGCCCCTGAGGCGAAGGACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCGGC 204430 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||| |||||||| || ||||| || || || || | || Sbjct 204431 CAACGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 204490 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CT 41810 | || |||||||||| ||| || |||| ||| | | || ||||| ||| || Sbjct 204491 GATGCCCTCCTTGTCCTGGATCTTCGTCTTC-ACGTTGTCAACTGTGTC---CGAACTCT 204546 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| |||| || |||||||| || ||||| ||||| |||||||| |||||| Sbjct 204547 CCACGTCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 204599 >seq36 Length=625759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 41723 CCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGC 41782 ||||| || |||| |||||| || |||| |||| || |||||||||| ||| ||| | Sbjct 425263 CCGGCAAAGATCAAGCGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTTGCC 425322 Query 41783 TTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGC 41842 |||| | | |||||||| | ||| ||||||| || || || || || || ||| Sbjct 425323 TTCACATTCTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGC 425382 Query 41843 GTCTTTACGAAAATCTGCATG 41863 ||||| ||||||||||||||| Sbjct 425383 GTCTTCACGAAAATCTGCATG 425403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || ||| ||||||||||||||| ||||||| | Sbjct 424858 CCGCCACGAAGACGCAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCG 424917 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 || ||||| |||| ||||||||||| || Sbjct 424918 AGAGTGCGTCCGTCCTCGAGCTGCTTTCC 424946 >seq202 Length=131032 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| |||||||| ||||||| | | ||| | |||||| | ||| || || || || Sbjct 51413 CTCCTTTTGAATGTTGTAGTCGGCCACGCTGCACATGTCGTCCAACTGTTTCCCCGCAAA 51472 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||||| || ||||| |||| ||| | ||| ||||| |||||| ||||| Sbjct 51473 TATCAGTCGTTGTTGCTCCGGCCGAATCCCCTCTTTGTCATGGATTTTGGTCTTCACGTT 51532 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||| | || | ||| |||| || || || || || || || | |||||||| Sbjct 51533 CGCGATAGTGCCACTGGTCTCAACCTTCAGAGTGATGGTCTTCCCGGTGAAAGTCTTTAC 51592 Query 41851 GAAAATCTG 41859 ||| ||||| Sbjct 51593 GAATATCTG 51601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462291020815200