Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2872 91.5 1e-13 seq1557 91.5 1e-13 seq93 91.5 1e-13 >seq2872 Length=49360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| ||| | || |||||||| |||||||| || |||||| | || |||||||| Sbjct 2800 GATCAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGAC 2859 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| || ||||||||| |||| Sbjct 2860 TACAACATTCAGAAGGAGTCCACTCTTCACTTGGT 2894 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| ||| | || |||||||| |||||||| || |||||| | || |||||||| Sbjct 1835 GATCAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGAC 1894 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| ||||||||||| || ||||||||| Sbjct 1895 TACAACATTCAGAAGGAGTCCACTCTTCAC 1924 >seq1557 Length=337913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| ||| | || |||||||| |||||||| || |||||| | || |||||||| Sbjct 14281 GATCAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGAC 14340 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| || ||||||||| |||| Sbjct 14341 TACAACATTCAGAAGGAGTCCACTCTTCACTTGGT 14375 >seq93 Length=214751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| ||| | || |||||||| |||||||| || |||||| | || |||||||| Sbjct 184901 GATCAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGAC 184842 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| || ||||||||| |||| Sbjct 184841 TACAACATTCAGAAGGAGTCCACTCTTCACTTGGT 184807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428300120568815