Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1557 89.7 4e-13 seq2872 87.8 2e-12 >seq1557 Length=337913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | |||||||||||| |||||||| ||||| |||| || || | || Sbjct 14378 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCT 14319 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||||||||| ||| | || || | ||||| || || | ||| |||||||| Sbjct 14318 TCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCC 14259 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | || || || |||| |||| || || || Sbjct 14258 TGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTT 14199 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || |||||||| Sbjct 14198 TTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||||||||| |||||||| ||||| |||| || || | || || ||||||||||| Sbjct 1918 AGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCC 1859 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | || || | ||||| || || | ||| |||||||| |||||| || Sbjct 1858 GGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTT 1799 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 ||| | | | || || || |||| |||| || || || |||||||| | || Sbjct 1798 CACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGT 1739 Query 21158 TTTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 1738 CTTCACGAAAATTTGCAT 1721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422223829590068