Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1557 113 5e-20 seq2872 109 6e-19 seq93 105 7e-18 seq820 96.9 4e-15 seq1709 95.1 1e-14 seq210 95.1 1e-14 seq1893 89.7 5e-13 seq3189 87.8 2e-12 >seq1557 Length=337913 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || |||||||| ||||| | || || || | Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | |||| | ||| || || | ||||| ||||||||||| | || || Sbjct 14227 GACACAGTTGACAACG-TGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 14285 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||||||||| || || | ||||| | ||||||||| Sbjct 14286 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 14345 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| |||| || || | || | ||| | |||||||| Sbjct 14346 CATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGGC 14394 >seq2872 Length=49360 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || |||||||| ||||| | || || || | Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| || | |||| | ||| || || | ||||| ||||||||||| | || || Sbjct 1781 GACACAGTTGACAACG-TGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 1839 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||||||||| || || | ||||| | ||||||||| Sbjct 1840 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 1899 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| |||| || || Sbjct 1900 CATTCAGAAGGAGTCCACTCTTCA 1923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | || |||||||| || |||| || ||||||||||| || Sbjct 2779 GACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAA 2838 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| | |||||||||||| ||||||||| |||| || || | || | Sbjct 2839 GATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTT 2898 Query 40903 CGCTTGAGGGGCGGC 40917 ||| | |||||||| Sbjct 2899 CGCCTCCGGGGCGGC 2913 >seq93 Length=214751 Score = 105 bits (116), Expect = 7e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATT-CGTAAAAACGCTCACGGGCAAAACC-ATCACCGTCGACGTCGAAGCCA 40747 |||||||| || ||| || || || || ||||||| | ||||| | || || ||| Sbjct 185017 ATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTT 184958 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| || | |||| | ||| || || | ||||| ||||||||||| | || Sbjct 184957 CGGACACAGTTGACAACG-TGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGAT 184899 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || |||| || ||||||||||| || || | ||||| | ||||||| Sbjct 184898 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 184839 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||| ||||||||| |||| || || | || | ||| | |||||||| Sbjct 184838 AACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGGC 184788 >seq820 Length=160256 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||| | ||||| ||||| | ||||| ||| |||| | | || || || | | Sbjct 12968 AATGCAAGTTTTCGTGAAAACTTTGACGGGAAAAGCCATGGCATTGGAGGTGGACAGCTC 13027 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | || || | || | | |||| || |||||||| | | ||| Sbjct 13028 GGACACCATCAACAACCTGAAACAGAAGGTCCAGGACACGGAAGGCATCCCAACTGGCCA 13087 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| |||||||||||||| || | || ||||| | |||||||| Sbjct 13088 ACAACGGCTGATCTTTGCGGGCAAACAGCTCGATAATGACCGCACTTTGGCTGACTACAA 13147 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||| || ||||| || ||||| ||||| || ||||| | ||||||| || Sbjct 13148 CATTCAAAAGGACGCAACGCTTCATCTGCTGCTGCGCCTCCGGGGCGGAGG 13198 >seq1709 Length=109515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/136 (77%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC-A 40747 ||||||||| ||||| || |||||||| || ||||||||||| | || || |||||| | Sbjct 13862 AATGCAAATTTTCGTCAAGACGCTCACCGGAAAAACCATCACTCTGGAGGTTGAAGCCTA 13803 Query 40748 CCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||||| | | | ||||| | |||| ||| || | ||||| ||||||||||| |||| Sbjct 13802 GCGACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGAT 13744 Query 40807 CAGCAACGACTCATCT 40822 ||||| || | |||| Sbjct 13743 CAGCAGCGTTTGATCT 13728 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || |||||||||||||| | || || || |||| | Sbjct 18092 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 18151 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| ||| || | ||||| ||||||||||| |||| || Sbjct 18152 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCA 18210 Query 40809 GCAACGACTCATCT 40822 ||| || | |||| Sbjct 18211 GCAGCGTTTGATCT 18224 >seq210 Length=19051 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || ||||| |||||||| | || || || |||| | Sbjct 8896 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAGACCATCACTTTGGAGGTTGAGGCCAGC 8955 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| ||| || | ||||||||||||||||| |||| || Sbjct 8956 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAAGAGGGCATCCCGCCGGATCA 9014 Query 40809 GCAACGACTCATCT 40822 ||| || | |||| Sbjct 9015 GCAGCGTTTGATCT 9028 >seq1893 Length=1815 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || |||||||||||||| | || || || |||| | Sbjct 670 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 611 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA-CC 40807 |||| | | | ||||| | |||| ||| || | ||||| ||||||||||| |||| | Sbjct 610 GACACCATCGAAAACG-TGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGAGTC 552 Query 40808 AGCAACGACTCATCT 40822 |||| || | |||| Sbjct 551 AGCAGCGTTTGATCT 537 >seq3189 Length=1054 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/240 (69%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 40689 AATG-CAAATATTCGT--AAAAACGCTCACGGGCAAAA---CCATCACCGTCGACGTCGA 40742 |||| ||||| | ||| || ||||||||| ||| || ||||||| | || || || Sbjct 387 AATGTCAAATTTACGTTCAAGAACGCTCACCGGCCGAAGACCCATCACTCTGGAGGTGGA 328 Query 40743 AGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 |||| ||||| | | | | | ||||| ||||| | |||||||| || || || | Sbjct 327 GGCCAGCGACACCATCGAGAAGGCCAAGGCCAAAATCCACGACAAAGTAGGGATTCCGCC 268 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGC--TGGACGACGAGCGCACCCTCAAC 40860 | | |||||||| ||| |||||||||||| | || | || || | | | Sbjct 267 ---CAAACAACGACTGGTCTTTGCGGGCAAACAGTCTTTGAGGGCGTGCAAAGCATGGTG 211 Query 40861 GACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||| || |||||| ||| || |||||| ||| || ||| | || |||||| Sbjct 210 GACTACAACATTCAAAAGGAGTCCAACCTACATCTAACGTTACGGTTGTGCGGGGGCGGC 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515174936230480