Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1557 143 2e-29 seq2872 140 3e-28 seq93 134 1e-26 seq1709 89.7 4e-13 seq839 87.8 2e-12 seq1893 86.0 5e-12 seq820 84.2 2e-11 seq210 84.2 2e-11 >seq1557 Length=337913 Score = 143 bits (158), Expect = 2e-29 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| ||| ||| ||||| ||| ||| Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGT 118648 |||||||| || || |||| || || |||||||| || || |||||||||||||| || Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || || || | || || ||||||| ||||| || || | || | ||||| Sbjct 14255 A--TCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTT 14198 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||||| || || || ||||| |||||| Sbjct 14197 TGCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 140 bits (154), Expect = 3e-28 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 118534 AGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCT 118593 |||| | || ||||| || ||||||||||| ||| ||| ||||| ||| ||||||| Sbjct 1925 AGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCT 1866 Query 118594 GTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATT 118652 |||| || || |||| || || |||||||| || || |||||||||||||| || | | Sbjct 1865 GTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGA--T 1808 Query 118653 TTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || || || || | || || ||||||| ||||| ||||| | || | ||||||||| Sbjct 1807 CTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCC 1748 Query 118712 GGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || ||||| |||||| Sbjct 1747 GGTCAGTGTCTTCACGAAAATTTGCATG 1720 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| ||| ||| ||||| ||| ||| Sbjct 2894 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 2835 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||||| || || |||| || || |||||||| || || |||||||||||||| Sbjct 2834 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC 2779 >seq93 Length=214751 Score = 134 bits (148), Expect = 1e-26 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || ||||||||||| ||| ||| ||||| ||| ||| Sbjct 184807 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 184866 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGT 118648 |||||||| || || |||| || || |||||||| || || ||||||||||||| ||| Sbjct 184867 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 184926 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCG-TT 118706 | | || || || || | || || ||||||| || || ||||| | || | || || Sbjct 184927 A--TCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTT 184984 Query 118707 TTGCCGGTCAGAGTTTTTAC-AAAAATCTGCATG 118739 ||||||||||| || || || |||||| |||||| Sbjct 184985 TTGCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018 >seq1709 Length=109515 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| | |||||||||||| || || |||||||||||||| || ||| || || | Sbjct 18224 AGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGT 18165 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||||| |||||| || ||| ||||| | || | ||||||||||| || || || | Sbjct 18164 TTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGCGTCTTCA 18105 Query 118726 CAAAAATCTGCATG 118739 | ||||| |||||| Sbjct 18104 CGAAAATTTGCATG 18091 >seq839 Length=159509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| |||||||||||||| || || |||||||||||||| || || ||| || | Sbjct 77856 AGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTCACGT 77915 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| || ||||||||| | || | || |||||||| || || || | Sbjct 77916 TCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGCGTCTTGA 77975 Query 118726 CAAAAATCTGCAT 118738 | ||||| ||||| Sbjct 77976 CGAAAATTTGCAT 77988 >seq1893 Length=1815 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGA-TCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTG 118657 ||||| |||| | |||||||||| || || || |||||||||||||| || ||| Sbjct 530 CCAGCAAAGATCAAACGCTGCTGACTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGC 589 Query 118658 TTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || || | ||||| |||||| || ||| ||||| | || | ||||||||||| || Sbjct 590 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 649 Query 118718 AGTTTTTACAAAAATCTGCATG 118739 || || || ||||| |||||| Sbjct 650 CGTCTTCACGAAAATTTGCATG 671 >seq820 Length=160256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 || |||||||||||||| || || |||||| || ||||||||||| || || || Sbjct 13159 TCCTTTTGAATGTTGTAGTCAGCCAAAGTGCGGTCATTATCGAGCTGTTTGCCCGCAAAG 13100 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || || || || || | | || ||||| ||| |||| | || ||||| | | Sbjct 13099 ATCAGCCGTTGTTGGCCAGTTGGGATGCCTTCCGTGTCCTGGACCTTCTGTTTCAGGTTG 13040 Query 118668 TCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 | || |||||||| ||| || ||||| | | || | ||| || |||| |||||| || Sbjct 13039 TTGATGGTGTCCGAGCTGTCCACCTCCAATGCCATGGCTTTTCCCGTCAAAGTTTTCACG 12980 Query 118728 AAAATCTGCAT 118738 |||| ||||| Sbjct 12979 AAAACTTGCAT 12969 >seq210 Length=19051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| |||| | |||||||||||| || || |||||||| ||||| || ||| Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||||| |||||| || ||| ||||| | || | || |||||||| || Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 118719 GTTTTTACAAAAATCTGCATG 118739 || || || ||||| |||||| Sbjct 8915 GTCTTCACGAAAATTTGCATG 8895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433794060332116