Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1557 105 5e-18 seq93 100 2e-16 seq2872 91.5 1e-13 >seq1557 Length=337913 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| |||||| || || || || |||||||||||||||||| Sbjct 14393 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 14334 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 || || | |||||| | |||||||| ||| |||| || | ||| ||||| || Sbjct 14333 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 14274 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||| ||||| || || || || ||| || | |||| ||||| ||| Sbjct 14273 ATGCCCTCCTTGTCCTGGATCTTCGT--CTTCACGTTGTCAACTGTGTCCGAACTCTCCA 14216 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||||| ||| || || ||||||||||| Sbjct 14215 CATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq93 Length=214751 Score = 100 bits (110), Expect = 2e-16 Identities = 166/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| |||||| || || || || |||||||||||||||||| Sbjct 184789 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 184848 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 || || | |||||| | |||||||| ||| |||| || | ||| ||||| || Sbjct 184849 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 184908 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TC 18274 | ||| ||||| || || || || ||| || | |||| |||| ||| | || Sbjct 184909 ATGCCCTCCTTGTCCTGGATCTTCGT--CTTCACGTTGTCAACTGTGT--CCGAACTTTC 184964 Query 18275 GGTTTCAATGGTGAT-GCTTTTGCCGGTCAATGTTTTTAC-AAAAATTTGCAT 18325 || | ||||| | |||||||||||| ||| || || |||||||||||| Sbjct 184965 CACCTCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq2872 Length=49360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || || || || |||||||||||||||||||| || | |||||| | || Sbjct 1924 GTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTG 1865 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GGCAATT 18239 |||||| ||| |||| || | ||| ||||| || | ||| ||||| || || || Sbjct 1864 TTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTT 1805 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 || ||| || | |||| ||||| ||| || | ||||| |||||||| Sbjct 1804 CGT--CTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCG 1747 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||| || || ||||||||||| Sbjct 1746 GTCAGTGTCTTCACGAAAATTTGCAT 1721 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| |||||| || || || || |||||||||||||||||| Sbjct 2912 CCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC 2853 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 || || | |||||| | |||||||| ||| |||| || | ||| ||||| || Sbjct 2852 ATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGG 2793 Query 18219 ACGCCTTCCTTATC 18232 | ||| ||||| || Sbjct 2792 ATGCCCTCCTTGTC 2779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379312224368385