Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1557 123 2e-23 seq93 114 1e-20 seq2872 111 1e-19 seq1709 82.4 7e-11 >seq1557 Length=337913 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| ||||| |||||||||||||| | || || || || Sbjct 14166 CATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTC 14225 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| || || | || || || || ||||||||| ||| | ||||| || || Sbjct 14226 GGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 14285 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || || || ||||||||| | ||||| || ||| ||| || || Sbjct 14286 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 14345 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || |||||||| |||| ||| | || ||||||| Sbjct 14346 CATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGG 14393 >seq93 Length=214751 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTT-CGTAAAGACTCTGACAGGCAAAA-CGATCACCGTCGACGTTGAACCG 31249 |||||||||||| ||| ||||| ||||| ||||||| ||||||| | || || ||| Sbjct 185018 CATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGT 184959 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| || || | || || || || ||||||||| ||| | ||||| || Sbjct 184958 TCGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGAT 184899 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| || || || || || ||||||||| | ||||| || ||| ||| || Sbjct 184898 CAGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTAC 184839 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || |||||||| |||| ||| | || ||||||| Sbjct 184838 AACATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTCCGGGGCGG 184789 >seq2872 Length=49360 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| ||||| |||||||||||||| | || || || || Sbjct 1720 CATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTC 1779 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| || || | || || || || ||||||||| ||| | ||||| || || Sbjct 1780 GGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 1839 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || || || ||||||||| | ||||| || ||| ||| || || Sbjct 1840 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 1899 Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395 |||||| || || || |||||||| Sbjct 1900 CATTCAGAAGGAGTCCACTCTTCA 1923 >seq1709 Length=109515 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| || || |||||||| ||||| | || ||||| | Sbjct 18091 CATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAG 18150 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||||| || || || || || ||||||||| ||| | ||||| || | Sbjct 18151 CGACACCATCGAAAACGTGAAGGCAAAG-ATCCAGGACAAGGAGGGCATCCCGCCGGATC 18209 Query 31311 AGCAGCGTCTAATATTCGCTGG 31332 |||||||| | || || || || Sbjct 18210 AGCAGCGTTTGATCTTTGCCGG 18231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728103094160