Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2872 127 2e-24 seq1557 127 2e-24 seq93 114 1e-20 seq210 96.9 3e-15 seq839 87.8 2e-12 >seq2872 Length=49360 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 139560 AGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCT 139619 |||||| || ||||| || |||||||| || ||| ||| |||| |||||||||| Sbjct 1925 AGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCT 1866 Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 |||| || ||| ||||||| ||||||||||| || || ||||| || ||||| ||| | Sbjct 1865 GTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCT 1806 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | || | | || |||||||| | ||||||||| | || | ||| ||||||| Sbjct 1805 TCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGG 1746 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 ||| || || ||||| |||||||| Sbjct 1745 TCAGTGTCTTCACGAAAATTTGCAT 1721 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || ||||||| || ||||| || |||||||| || ||| Sbjct 2913 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 2854 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 ||| |||| |||||||||||||| || ||| ||||||| ||||||||||| || || Sbjct 2853 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 2794 Query 139657 TATGCCTTCTTTGTC 139671 ||||| || ||||| Sbjct 2793 GATGCCCTCCTTGTC 2779 >seq1557 Length=337913 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || ||||||| || ||||| || |||||||| || ||| Sbjct 14394 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 14335 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 ||| |||| |||||||||||||| || ||| ||||||| ||||||||||| || || Sbjct 14334 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 14275 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || |||||||| | |||||| Sbjct 14274 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCAC 14215 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||| |||||||||| || || ||||| |||||||| Sbjct 14214 ATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq93 Length=214751 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || ||||||| || ||||| || |||||||| || ||| Sbjct 184788 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 184847 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 ||| |||| |||||||||||||| || ||| ||||||| ||||||||||| || || Sbjct 184848 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 184907 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || |||||||| | ||||| Sbjct 184908 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCAC 184967 Query 139717 CTCAACGGTCACCG-TCTTGCCGGTCAACGTTTTTACG-AATATTTGCAT 139764 ||| | || | || | |||||||||| || || ||| || |||||||| Sbjct 184968 CTCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq210 Length=19051 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| |||||| ||| |||||||| || || ||||| |||||||| ||| ||| Sbjct 9036 ACCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGC 8977 Query 139684 TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 || | | ||| | |||||| ||| ||| ||||| | || | ||||||||||| | Sbjct 8976 CTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAG 8917 Query 139744 CGTTTTTACGAATATTTGCAT 139764 ||| || ||||| |||||||| Sbjct 8916 CGTCTTCACGAAAATTTGCAT 8896 >seq839 Length=159509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||| ||| |||||||||| |||||||| || || ||||| || ||||| ||| || Sbjct 77848 ACCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGC 77907 Query 139684 TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAA 139743 ||| | | || | |||||| ||| ||| ||||| | || | ||||||||||| | Sbjct 77908 TTTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAG 77967 Query 139744 CGTTTTTACGAATATTTGCAT 139764 ||| || ||||| |||||||| Sbjct 77968 CGTCTTGACGAAAATTTGCAT 77988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496021381901600