Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1557 107 2e-18 seq2872 105 7e-18 seq93 98.7 1e-15 >seq1557 Length=337913 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || || || || || |||||||| ||| ||| |||| |||||| Sbjct 14375 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 14316 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| || ||| ||||||| ||||||||||| || || ||||| || ||||| Sbjct 14315 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 14256 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | || || ||||||| || || || | ||| | ||| ||| Sbjct 14255 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTTTTG 14196 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||| ||| || ||||| |||||||| Sbjct 14195 CCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || || || |||||||| ||| ||| |||| |||||||| ||| Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| ||||||| ||||||||||| || || ||||| || ||||| || || Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTC 1804 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || || ||||||| || || || | ||| | ||| ||||||||| Sbjct 1803 GTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTC 1744 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||| || ||||| |||||||| Sbjct 1743 AGTGTCTTCACGAAAATTTGCAT 1721 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || || || || || |||||||| ||| ||| |||| |||||| Sbjct 2894 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 2835 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || ||||| || ||| ||||||| ||||||||||| || || ||||| || ||||| Sbjct 2834 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTC 2779 >seq93 Length=214751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || || || || || |||||||| ||| ||| |||| |||||| Sbjct 184807 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCG 184866 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| || ||| ||||||| ||||||||||| || || ||||| || ||||| Sbjct 184867 AGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGG 184926 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG-TCTT 143154 || || || | | || || ||||||| ||| || || | ||| | || | || Sbjct 184927 ATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTTTCCACCTCCAAAGTGATCGTTTTT 184986 Query 143155 GCCGGTCAATGTTTTTACG-AATATTTGCAT 143184 |||||||| ||| || ||| || |||||||| Sbjct 184987 GCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506970841125360