Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_005282.1 Length=86155 Score E Sequences producing significant alignments: (Bits) Value seq1544 107 1e-18 >seq1544 Length=2721 Score = 107 bits (118), Expect = 1e-18 Identities = 124/166 (75%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 85080 TCGGCCTTATCTATGGTGACTCTATCACACTGGAACGTGCAAACGAAATCCTGAAGCGTC 85139 ||||||| || || ||||| ||||| |||||||||||| | |||||||| | |||| Sbjct 890 TCGGCCTGATTTACGGTGATAGCATCACTCTGGAACGTGCAGAACAAATCCTGCAACGTC 831 Query 85140 TGTATGAAATGGGTTTTGCAAGTTCT---AACGTAGTGTTTGGTGTAGGCTCTTACACTT 85196 || || | ||| || ||| || ||| | ||||| ||||||||||| ||||| | Sbjct 830 TGATGGATAAGGGCTTC---AGTGCTGGTAACATCGTGTTCGGTGTAGGCTCGTACACCT 774 Query 85197 ACCAGTACATGACTCGTGACACCTTTGCATTTGCTGTCAAAGCAAC 85242 |||||||||| ||||||||||| || | | ||| |||| || || Sbjct 773 ACCAGTACATCACTCGTGACACGTTCGGCATGGCTATCAAGGCTAC 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 275548116864548