Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3256 91.5 1e-13 >seq3256 Length=234408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 5668 GCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAG 5727 ||| |||||||||| ||| || || || ||||||||||| ||| | ||||| || ||||| Sbjct 84153 GCCCCGGTAGTCGGTGTCAATGACTCCAGCGCCCACGTCAATGGAATGCTTCACTGCCAG 84094 Query 5728 GCCGGAGCGGGGAGCCACGCGGCCGTAG 5755 || |||||||| |||||||| |||||| Sbjct 84093 TCCAGAGCGGGGGGCCACGCGTCCGTAG 84066 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 5668 GCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAG 5727 ||| |||||||||| ||| || || || ||||||||||| ||| | ||||| || ||||| Sbjct 86018 GCCCCGGTAGTCGGTGTCAATGACTCCAGCGCCCACGTCAATGGAATGCTTCACTGCCAG 85959 Query 5728 GCCGGAGCGGGGAGCCACGCGGCCGTAG 5755 || |||||||| |||||||| |||||| Sbjct 85958 TCCAGAGCGGGGGGCCACGCGTCCGTAG 85931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430018376627576