Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3043 102 1e-17 seq2552 102 1e-17 seq1332 93.3 7e-15 >seq3043 Length=241195 Score = 102 bits (112), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 172486 TCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 172545 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| | |||| || |||| |||| || |||| ||| Sbjct 172546 GAGGCGTTAAGCGCATCTCTGGCCTCATCTACGAGGAGACTCGTTCCGTGCTGAAAGTCT 172605 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 172606 TCCTGGAAAACGTCATCC 172623 >seq2552 Length=267837 Score = 102 bits (112), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 180165 TCTTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 180224 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| | |||| || || | |||| || ||||| ||| Sbjct 180225 GAGGCGTTAAGCGCATCTCTGGCCTCATCTACGAGGAAACTCGTTCCGTGTTGAAAGTCT 180284 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 180285 TCCTGGAAAACGTCATCC 180302 >seq1332 Length=128913 Score = 93.3 bits (102), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 46770 TCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 46829 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| ||||||| | |||| || || | |||| || | || ||| Sbjct 46830 GAGGCGTTAAGCGCATCTCTGGCCTCATCTACGAGGAAACTCGTTCCGTGCTCAAAGTCT 46889 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 46890 TCCTGGAAAACGTCATCC 46907 Score = 93.3 bits (102), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||||| Sbjct 50140 TCTTGCGGGATAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGTCTGGCCCGTCGTG 50199 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 | || || ||||| |||| || | |||| || || | |||| || |||| ||| Sbjct 50200 GAGGCGTTAAGCGCATCTCCGGCCTCATCTACGAGGAAACTCGTTCCGTGCTGAAAGTCT 50259 Query 16572 TCCTCAAGACCGTTATCC 16589 |||| | | ||| |||| Sbjct 50260 TCCTGGAAAACGTCATCC 50277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068915967989