Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1557 84.2 2e-11 seq2872 82.4 6e-11 >seq1557 Length=337913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || || || ||||| || || | || |||| Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| ||||| || || || || || || || ||| |||| |||||| Sbjct 14227 GACACAGTT-GACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 14285 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | || || | ||| |||||||| | ||||||| | || |||||||| || || Sbjct 14286 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 14345 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||| || ||||| ||| | || |||| Sbjct 14346 CATTCAGAAGGAGTCCACTCTTCACTTGGT 14375 >seq2872 Length=49360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || || || ||||| || || | || |||| Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| ||||| || || || || || || || ||| |||| |||||| Sbjct 1781 GACACAGTT-GACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCA 1839 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||| | || || | ||| |||||||| | ||||||| | || |||||||| || || Sbjct 1840 GCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAA 1899 Query 115465 CATTCAAAAAGAGTCTACT 115483 |||||| || ||||| ||| Sbjct 1900 CATTCAGAAGGAGTCCACT 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425308371192760