Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq269 95.1 1e-14 seq1557 89.7 5e-13 seq2872 87.8 2e-12 >seq269 Length=200655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTC 145683 || || || ||||| || || || || ||||| || || | || |||| | ||| || Sbjct 149919 GCAATGGAGGCCAAGTTGCACACAGCGGTCTCATCCGGTGACGAA-TATTCAATGATTTC 149977 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 || ||||||||| ||||| ||||| |||| ||||||||||| |||| ||||| Sbjct 149978 GGTGCACAAATTTGAGCATTTTATGGTGCCCAAGTTTTGCTGATTTGACTTCCGATTGCA 150037 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 |||||||||| | | ||||||||| ||| |||||| ||||| Sbjct 150038 CGCGTCCTTGAACAACATGTACGGCGTGCCGGTCTCCGTCTGCG 150081 >seq1557 Length=337913 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || || || || | || |||||||| ||||||||||| ||| Sbjct 14394 GCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGC 14335 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 ||| ||||| || || ||||| ||||| || |||| | || ||||| || || || Sbjct 14334 CATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGG 14275 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | || || || || | ||| | Sbjct 14274 GATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCAC 14215 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||||| ||||| || || || |||||||| |||||| Sbjct 14214 ATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| ||| ||| ||||| || || ||||| ||||| Sbjct 1917 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCG 1858 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | || ||||| || || ||||| || || ||||| ||| ||| ||| Sbjct 1857 GCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTC 1798 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || || || || | ||| | || | || | ||||| ||||| || || Sbjct 1797 ACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGTC 1738 Query 131218 TTTACGAAAATCTGCATG 131235 || |||||||| |||||| Sbjct 1737 TTCACGAAAATTTGCATG 1720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972248200320