Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1557 104 2e-17 seq2872 100 2e-16 seq93 98.7 8e-16 seq2298 84.2 2e-11 >seq1557 Length=337913 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||||||| || | | || Sbjct 14378 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCT 14319 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||||| ||| | || ||||| || || || || | |||||| ||||| Sbjct 14318 TCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCC 14259 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | || ||||| |||| |||| ||||| ||| Sbjct 14258 TGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACATCCAAAGTGATCGTT 14199 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| || || || ||||| ||||| Sbjct 14198 TTGCCGGTCAGTGTCTTCACGAAAATTTGCAT 14167 >seq2872 Length=49360 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||||||| || | | || || | ||| Sbjct 1923 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGT 1864 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | || ||||| || || || || | |||||| ||||| || | | Sbjct 1863 TTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTC 1804 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | || ||||| |||| |||| ||||| ||||| |||||| Sbjct 1803 GTCTTCACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTC 1744 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||| ||||| Sbjct 1743 AGTGTCTTCACGAAAATTTGCAT 1721 >seq93 Length=214751 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||||||| || | | || Sbjct 184804 AGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCT 184863 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||||| ||| | || ||||| || || || || | |||||| ||||| Sbjct 184864 TCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCC 184923 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCCGTTTCCACGGTGATGG 16901 || | | |||||| | | | || |||| ||| | ||| |||| ||||| | Sbjct 184924 TGGATCTTCGTCTTCACGTTGTCAACTGTGT--CCGAACTTTCCACCTCCAAAGTGATCG 184981 Query 16902 TTTTT-CCGGTCAGCGTTTTGAC-AAAAATCTGCAT 16935 ||||| |||||||| || || || |||||| ||||| Sbjct 184982 TTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCAT 185017 >seq2298 Length=272061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 16742 GACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCA 16801 ||||||||||| ||||||||||| ||||| || ||| || | ||||| | ||| Sbjct 213131 GACTCCTTTTGAATGTTGTAGTCCACCATGCTTCGCATGTCTTCAAGCTGTTTCCTTGCA 213072 Query 16802 TAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACC 16861 | || |||||| |||| | | || | ||| |||||||| |||| |||||| Sbjct 213071 AAGATCAGCCGCAGTTGCTTC-TTGGAATGCCTTCTTTGTCTTGTATTTTGGCCTTCACG 213013 Query 16862 TGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTG 16921 | | | |||||||| | ||| |||| |||||||| |||||||| ||||| || Sbjct 213012 TTCTCGATAGTGTCGCTAGCCTCAACCTCCAGAGTGATGGTCTTTCCGGTAAGCGTCTTC 212953 Query 16922 ACAAAAAT 16929 || ||||| Sbjct 212952 ACGAAAAT 212945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405054067930270