Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2264 140 2e-28 seq809 140 2e-28 seq820 95.1 8e-15 seq5324 91.5 1e-13 seq593 84.2 1e-11 >seq2264 Length=278406 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 271646 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 271705 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 271706 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 271740 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 245716 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 245775 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 245776 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 245810 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 258420 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 258479 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 258480 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 258514 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 266429 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 266488 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||| |||||||| || |||| ||||| Sbjct 266489 TGATCCATTCGTGCGCGTCGGTAGTTAGCCGACGA 266523 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 248796 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 248855 Query 20007 GGTAATATTTAGCCTTA 20023 || |||| || |||| Sbjct 248856 GGCCGTATTCAGTCTTA 248872 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 261539 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 261598 Query 20007 GGTAATATTTAGCCTTA 20023 || |||| || |||| Sbjct 261599 GGCCGTATTCAGTCTTA 261615 >seq809 Length=160633 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 160362 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 160303 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 160302 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 160268 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| Sbjct 139807 CTCTCTCTTCAAAGTGCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGT 139748 Query 20007 GGTAATATTTAGCCTTA 20023 || |||| || |||| Sbjct 139747 GGCCGTATTCAGTCTTA 139731 >seq820 Length=160256 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| || || |||||| || ||||||||||| ||||| |||| |||| || || Sbjct 13183 CGCAGCAGCAGATGAAGCGTTGCGTCCTTTTGAATGTTGTAGTCAGCCAAAGTGCGGTCA 13124 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 | || | ||||| || ||||| || || |||||||| | | |||| |||||| || Sbjct 13123 TTATCGAGCTGTTTGCCCGCAAAGATCAGCCGTTGTTGGCCAGTTGGGATGCCTTCCGTG 13064 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| | || || |||| || | || || || || || || || |||| || Sbjct 13063 TCCTGGACCTTCTGTTTCAGGTTGTTGATGGTGTCCGAGCTGTCCACCTCCAATGCCATG 13004 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||| |||||||| ||||||||||| | ||||| Sbjct 13003 GCTTTTCCCGTCAAAGTTTTCACGAAAACTTGCAT 12969 >seq5324 Length=1245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCC-CTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| |||||||| ||||||| |||||| ||| |||||||||||||||||||||||| Sbjct 1066 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCTCTCGCGGTACTTGTTCGCTATCGGTCTCT 1125 Query 20006 CGGTAATATTTAGCCTT 20022 || ||||||||||| Sbjct 1126 CGCCCGTATTTAGCCTT 1142 >seq593 Length=9788 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| ||| | |||||||||| |||||| ||||| ||||| || | Sbjct 7164 ACCACCACGGAGACGAGACAAGAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGT 7105 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| || | |||| || | |||||||||||||| || | | || ||||| || || Sbjct 7104 CAAAGCAAGACCGTCTTCGAGCTGTTTTCCGGCAAAGATCAAACTCTGCTGATCAGACGG 7045 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGA 38250 | || || |||||| || ||| |||||| || |||| Sbjct 7044 AATGCGCTCCTTGTCCTGGATCTTTGCCTTCACTTTTTGGA 7004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334919143252463