Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2872 125 6e-24 seq1557 125 6e-24 seq93 122 7e-23 seq820 93.3 4e-14 seq839 86.0 5e-12 seq1709 82.4 6e-11 >seq2872 Length=49360 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| |||||| ||||| | || ||||| | | Sbjct 1721 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGAGGTGGAGAGTTCG 1780 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || ||| | | || || || || ||||||||||| || || || ||||| Sbjct 1781 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 1840 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||||||| | || ||| |||||| | |||| |||||| Sbjct 1841 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAAC 1900 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 1901 ATTCAGAAGGAGTCCAC 1917 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || ||||| ||||| || || |||||||||||| Sbjct 2770 AAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAGCAACGGCTGATCTTTGCCGGCAAA 2829 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | || ||| |||||| | |||| ||||||||||| || || ||||| Sbjct 2830 CAGCTCGAAGATGGCCGCACGATGGCCGACTACAACATTCAGAAGGAGTCCAC 2882 >seq1557 Length=337913 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| |||||| ||||| | || ||||| | | Sbjct 14167 ATGCAAATTTTCGTGAAGACACTGACCGGCAAAACGATCACTTTGGATGTGGAGAGTTCG 14226 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || ||| | | || || || || ||||||||||| || || || ||||| Sbjct 14227 GACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 14286 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||||||| | || ||| |||||| | |||| |||||| Sbjct 14287 CAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACAAC 14346 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 14347 ATTCAGAAGGAGTCCAC 14363 >seq93 Length=214751 Score = 122 bits (134), Expect = 7e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTT-GTTAAAACTTTAACCGGTAAAA-CGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||||| || || || | ||||| |||| || ||||| | || ||||||| Sbjct 185017 ATGCAAATTTTTCGTGAAGACACTGACCGGCAAAAACGATCACTTTGGAGGTGGAAAGTT 184958 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || || ||| | | || || || || ||||||||||| || || || |||| Sbjct 184957 CGGACACAGTTGACAACGTGAAGACGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 184898 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||||| || || ||||||||||||||| | || ||| |||||| | |||| |||| Sbjct 184897 AGCAACGGCTGATCTTTGCCGGCAAACAGCTCGAAGATGGCCGCACGATGGCCGACTACA 184838 Query 22397 ACATTCAAAAAGAATCCAC 22415 ||||||| || || ||||| Sbjct 184837 ACATTCAGAAGGAGTCCAC 184819 >seq820 Length=160256 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||| |||| || |||||||| || || ||| | | | | || ||||| | | | Sbjct 12969 ATGCAAGTTTTCGTGAAAACTTTGACGGGAAAAGCCATGGCATTGGAGGTGGACAGCTCG 13028 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||||| || | || |||| ||| || || ||| | | ||| Sbjct 13029 GACACCATCAACAACCTGAAACAGAAGGTCCAGGACACGGAAGGCATCCCAACTGGCCAA 13088 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||||||| | || || ||||||| | | || |||||| Sbjct 13089 CAACGGCTGATCTTTGCGGGCAAACAGCTCGATAATGACCGCACTTTGGCTGACTACAAC 13148 Query 22399 ATTCAAAAAGA 22409 |||||||| || Sbjct 13149 ATTCAAAAGGA 13159 >seq839 Length=159509 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || || ||||||| || || || ||| | Sbjct 77988 ATGCAAATTTTCGTCAAGACGCTCACCGGCAAGACCATCACTCTGGAGGTCGAGGCCAGC 77929 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || || || ||||||||||| ||||| || ||||| Sbjct 77928 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 77869 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || |||||||| Sbjct 77868 CAGCGTCTGATCTTTGCCGG 77849 >seq1709 Length=109515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| ||||| ||||||| || || || ||| | Sbjct 18092 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACCATCACTCTGGAGGTTGAGGCCAGC 18151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || ||| || || ||||||||||| || || || ||||| Sbjct 18152 GACACCATCGAAAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 18211 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||| | || |||||||| Sbjct 18212 CAGCGTTTGATCTTTGCCGG 18231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419692841615245