Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1709 113 8e-20 seq839 105 1e-17 seq1012 96.9 6e-15 seq1893 95.1 2e-14 seq210 91.5 3e-13 seq3350 89.7 9e-13 seq2298 87.8 3e-12 seq1092 87.8 3e-12 seq2236 84.2 4e-11 >seq1709 Length=109515 Score = 113 bits (124), Expect = 8e-20 Identities = 112/143 (78%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || || || ||||| |||||||| || ||||||||| Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 68382 TTGACGGCCTCGATGGTGTCTGCT--GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGA 68439 || ||| ||||||||||| ||| | ||| || |||| |||||||||||||| |||| Sbjct 13781 TTCACGTTTTCGATGGTGTC-GCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGA 13839 Query 68440 GGGTCTTGACGAATATCTGCATT 68462 | ||||||||||| || |||||| Sbjct 13840 GCGTCTTGACGAAAATTTGCATT 13862 Score = 96.9 bits (106), Expect = 6e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || | | || || || || || ||||| |||||||| || ||||||||| Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| ||||||||||| |||| || || |||| ||||||||||| || || || Sbjct 18171 TTCACGTTTTCGATGGTGTC-GCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAG 18113 Query 68441 GGTCTTGACGAATATCTGCATTATG 68465 ||||| ||||| || ||||| ||| Sbjct 18112 CGTCTTCACGAAAATTTGCATGATG 18088 >seq839 Length=159509 Score = 105 bits (116), Expect = 1e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || | || || || || |||||||| |||||||| || ||||| || Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCT 77908 Query 68382 TTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| ||| | || || |||| |||||||| || || ||||| Sbjct 77909 TTCACGTTCTCGATGGTGTC-GCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAG 77967 Query 68441 GGTCTTGACGAATATCTGCATT 68462 ||||||||||| || |||||| Sbjct 77968 CGTCTTGACGAAAATTTGCATT 77989 >seq1012 Length=142389 Score = 96.9 bits (106), Expect = 6e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325 ||||||||||| ||||||| || |||| | ||| | || || || || || ||| Sbjct 141418 TGGACTCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTTTTCCGT 141477 Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 |||| || || | |||||| || | ||||||||||| || | || ||||| ||||| | Sbjct 141478 CGAAGATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCGCCTTCA 141537 Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || |||||||||||| | || || ||||| |||||||| Sbjct 141538 CGTTCTCGATGGTGTCGTTGGCCTCAACCTCCAAAGTGATGGT 141580 >seq1893 Length=1815 Score = 95.1 bits (104), Expect = 2e-14 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||| |||||||| || ||||||||||| ||| ||||||||||| ||| Sbjct 555 TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTTTCGATGGTGTC-GCT 613 Query 68406 -GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 | || || |||| ||||||||||| || || || ||||| ||||| || ||||| || Sbjct 614 GGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCATGAT 673 Query 68465 G 68465 | Sbjct 674 G 674 >seq210 Length=19051 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || || ||||| || ||||| || ||||||||||| ||| ||||||||| Sbjct 9017 TGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCCTTCACGTTTTCGATGGTG 8958 Query 68400 TCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458 || ||| | || || ||||| |||||||| || || || || ||||| ||||| || || Sbjct 8957 TC-GCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGCGTCTTCACGAAAATTTG 8899 Query 68459 CATTATG 68465 ||| ||| Sbjct 8898 CATGATG 8892 >seq3350 Length=231935 Score = 89.7 bits (98), Expect = 9e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || || |||| |||||||||| Sbjct 149771 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 149830 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 149831 CCCGCATCGGGC 149842 >seq2298 Length=272061 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/200 (72%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCAT--CTTCTAACT 68316 ||||| | ||||| ||||| ||||| || || | || | || ||| |||| | || Sbjct 213140 TGTAGGTTAGACTCCTTTTGAATGTTGTAGTCCACCA-TG-CTTCGCATGTCTTCAAGCT 213083 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 | |||| || || || || | |||| | |||||||||||| |||||||| || | Sbjct 213082 GTTTCCTTGCAAAGATCAGCCGCAGTTGCTTCT-TGGAATGCCTTCTTTGTCTTGTATTT 213024 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 | ||||| ||| |||||| ||||| ||| | || || |||| |||||||| ||||| Sbjct 213023 TGGCCTTCACGTTCTCGATAGTGTC-GCTAGCCTCAACCTCCAGAGTGATGGTCTTTCCG 212965 Query 68436 GTGAGGGTCTTGACGAATAT 68455 || || ||||| ||||| || Sbjct 212964 GTAAGCGTCTTCACGAAAAT 212945 >seq1092 Length=354092 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAG 268462 || |||||||||||||| || ||||||||||| | ||||| | || ||||| |||||| Sbjct 253112 GGACTCTCGTGGTTGAACAGAATGCCGTTGCAGGTAAACATTCTGTAGGCCTCGCGGTAG 253171 Query 268463 TTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGC 268500 || || || ||||||| | | ||| ||||||||| || Sbjct 253172 TTAACCACAATCCAGTAGGAATACAGCTTTGCAACCGC 253209 >seq2236 Length=286432 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 84454 GCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 84513 ||||||||||||||||||||| ||||| | || ||||||| || || ||| |||||||| Sbjct 163237 GCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCACGGGTTCGA 163296 Query 84514 GCCCCACATCGGGC 84527 ||||| ||||||| Sbjct 163297 GCCCCGTATCGGGC 163310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921543221115560