Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq93 96.9 3e-15 seq1557 95.1 1e-14 seq2872 91.5 1e-13 >seq93 Length=214751 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 114149 ACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTA 114208 |||||| ||||| || || | | || || || | || || || || ||||||||||| Sbjct 184782 ACAAATGCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTA 184841 Query 114209 ATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTC 114268 ||| ||| || || |||||| || ||||| || || |||| || || || || || Sbjct 184842 GTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATC 184901 Query 114269 CGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGA 114328 || || ||||| || ||||| ||||| || | | ||||| ||||| | Sbjct 184902 AGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACT 184961 Query 114329 TTCGACGTCCACGGTCACCG-TTTTGCCGGTCAGAGTTTTTAC-AAAAATCTGCATG 114383 ||| || |||| || | || ||||||||||||| || || || |||||| |||||| Sbjct 184962 TTCCACCTCCAAAGTGATCGTTTTTGCCGGTCAGTGTCTTCACGAAAAATTTGCATG 185018 >seq1557 Length=337913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 114149 ACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTA 114208 || ||| ||||| || || | | || || || | || || || || ||||||||||| Sbjct 14400 ACCAATGCCGCCCCGGAGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTA 14341 Query 114209 ATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTC 114268 ||| ||| || || |||||| || ||||| || || |||| || || || || || Sbjct 14340 GTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATC 14281 Query 114269 CGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGA 114328 || || ||||| || ||||| ||||| || | | ||||| ||||| | Sbjct 14280 AGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTCACGTTGTCAACTGTGTCCGAACT 14221 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||| || | ||||||||||||||| || || || ||||| |||||| Sbjct 14220 CTCCACATCCAAAGTGATCGTTTTGCCGGTCAGTGTCTTCACGAAAATTTGCATG 14166 >seq2872 Length=49360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| ||| || || |||||| || ||||| || Sbjct 1917 GTGGACTCCTTCTGAATGTTGTAGTCGGCCATCGTGCGGCCATCTTCGAGCTGTTTGCCG 1858 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || || || || || || || ||||| || ||||| ||||| || Sbjct 1857 GCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCGTCTTC 1798 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | || || |||| || | ||||||||||||||| || Sbjct 1797 ACGTTGTCAACTGTGTCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCGGTCAGTGTC 1738 Query 114366 TTTACAAAAATCTGCATG 114383 || || ||||| |||||| Sbjct 1737 TTCACGAAAATTTGCATG 1720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420099207573276