Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2872 82.4 6e-11 seq1557 82.4 6e-11 seq93 82.4 6e-11 >seq2872 Length=49360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| |||||||||||||||||| || |||| | || || Sbjct 2903 AGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCA-TCGTGCG 2845 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | || ||||||||||| ||||| || |||||||| ||| | || ||| Sbjct 2844 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTC 2785 Query 34029 TTTGTCC 34035 |||||| Sbjct 2784 CTTGTCC 2778 >seq1557 Length=337913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| |||||||||||||||||| || |||| | || || Sbjct 14384 AGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCCA-TCGTGCG 14326 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | || ||||||||||| ||||| || |||||||| ||| | || ||| Sbjct 14325 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTC 14266 Query 34029 TTTGTCC 34035 |||||| Sbjct 14265 CTTGTCC 14259 >seq93 Length=214751 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| |||||||||||||||||| || ||| || || || Sbjct 184798 AGGCGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGCC-ATCGTGCG 184856 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | || ||||||||||| ||||| || |||||||| ||| | || ||| Sbjct 184857 GCCATCTTCGAGCTGTTTGCCGGCAAAGATCAGCCGTTGCTGATCAGGCGGGATGCCCTC 184916 Query 34029 TTTGTCC 34035 |||||| Sbjct 184917 CTTGTCC 184923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397029140192146