Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Globodera_20pallida_20[genbank_20GCA_5F000724045.1_202014-05-30] 6,873 sequences; 123,625,196 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq839 105 2e-17 seq210 98.7 2e-15 seq1012 96.9 8e-15 seq1709 95.1 3e-14 seq1893 89.7 1e-12 >seq839 Length=159509 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || |||||||||||||| ||| | || || || || || |||||||| || ||| Sbjct 77849 CCGGCAAAGATCAGACGCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCT 77908 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||||| | || || || || ||||| ||||| ||||| || Sbjct 77909 TTCACGTTCTCGATGGTGTCGCTGGCCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGC 77968 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 77969 GTCTTGACGAAAATTTGCATT 77989 >seq210 Length=19051 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| |||||| ||| ||||| || ||||| |||||||| || || Sbjct 9035 CCAGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATCTTTGCC 8976 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| || | ||||| | || || || | ||||| ||||| ||||| || Sbjct 8975 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAAAGTGATGGTCTTGCCGGTAAGC 8916 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| || ||||| ||| Sbjct 8915 GTCTTCACGAAAATTTGCATGATG 8892 >seq1012 Length=142389 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288272 GAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTT 288331 ||||| || |||||| |||| || ||||||| | || || ||||| || ||||| Sbjct 141412 GAATCATGGACTCTTTTCGGATGTTGTAGTCGGTCAATGTTCGACCGTCGCATAGTTGTT 141471 Query 288332 TTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCG 288391 |||| ||||||||||||| |||||| || || |||||||| | |||||| |||| Sbjct 141472 TTCCGTCGAAGATCAGACGTTGTTGATCCAGGGGAATGCCTTCTTTCTTCTGGATCTTCG 141531 Query 288392 CTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 | |||||||| || || | ||| | | || || || | ||||| || | | | || Sbjct 141532 CCTTCACGTTCTCGATGGTGTCGTTGGCCTCAACCTCCAAAGTGATGGTAATACTTGCCA 141591 Query 288452 GAGTCTTGACGAATATCTGCATTATG 288477 ||||| || || || || || ||| Sbjct 141592 CTGTCTTCACAAAAATTTGTATGATG 141617 >seq1709 Length=109515 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| |||||| ||| ||||| || || || |||||||| || || Sbjct 13721 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 13780 Query 288394 TTCACGTTTTCTATAGAATCGCT-CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||||||||| || | ||||| | ||| || || || ||||| || || ||||| || Sbjct 13781 TTCACGTTTTCGATGGTGTCGCTAGGCTTCAACCTCCAGAGTGATGGTTTTTCCGGTGAG 13840 Query 288453 AGTCTTGACGAATATCTGCATT 288474 ||||||||||| || |||||| Sbjct 13841 CGTCTTGACGAAAATTTGCATT 13862 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||||| |||||| ||| ||||| || || || |||||||| || || Sbjct 18231 CCGGCAAAGATCAAACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCC 18172 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||||||||| || | ||||| | || || || || ||||| || || ||||| || Sbjct 18171 TTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTAAGC 18112 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| || ||||| ||| Sbjct 18111 GTCTTCACGAAAATTTGCATGATG 18088 >seq1893 Length=1815 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/147 (74%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTC 288390 || || ||||||| |||||| ||| || || ||| || || || |||||||| || Sbjct 530 CCAGCAAAGATCAAACGCTGCTGAC--TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTT 587 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| || | ||||| | || || || || ||||| || || ||||| Sbjct 588 GCCTTCACGTTTTCGATGGTGTCGCTGGCCTCAACCTCCAGAGTGATGGTTTTGCCGGTA 647 Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477 || ||||| ||||| || ||||| ||| Sbjct 648 AGCGTCTTCACGAAAATTTGCATGATG 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179550519264894